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Report for CCDS10858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10858.1 Public Homo sapiens 16 DDX28 24 110 108 CCDS HistoryNCBI Gene:55794Re-query CCDS DB by CCDS ID:10858.1Re-query CCDS DB by GeneID:55794See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332395.7 ENSP00000332340.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332395.7Link to Ensembl Protein Viewer:ENSP00000332340.6Re-query CCDS DB by Nucleotide ID:ENST00000332395Re-query CCDS DB by Protein ID:ENSP00000332340
Original member Current member NCBI NM_018380.4 NP_060850.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018380.4Link to Protein Sequence:NP_060850.2Re-query CCDS DB by Nucleotide ID:NM_018380Re-query CCDS DB by Protein ID:NP_060850Link to BLAST:NP_060850.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060850.2 540 Q9NUL7 540 100% 0 0

Chromosomal Locations for CCDS 10858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 68021580 68023202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGCTCTAACGCGGCCGGTGCGGCTCTTTTCCCTCGTGACTCGGTTGCTCCTGGCGCCGCGACGGGGCC
TCACGGTCCGCAGTCCCGACGAACCCCTGCCGGTGGTGCGCATCCCAGTGGCTCTACAGCGGCAGTTGGA
ACAGCGGCAGAGCAGGCGGCGGAACCTCCCGAGGCCGGTGCTGGTTCGACCCGGACCGCTGCTGGTTTCG
GCGCGGCGGCCGGAGTTGAACCAGCCGGCGCGCCTCACACTGGGCCGTTGGGAGCGCGCGCCGCTAGCCT
CTCAAGGCTGGAAGAGTCGACGCGCGCGTCGGGACCACTTCTCCATCGAGCGCGCGCAACAGGAGGCGCC
AGCGGTGCGAAAGCTCTCGTCTAAGGGCAGCTTTGCTGACCTGGGCCTGGAGCCCCGTGTGCTGCACGCA
CTACAGGAGGCTGCGCCTGAAGTCGTTCAGCCCACAACCGTGCAGTCTAGCACCATCCCCTCACTACTTC
GCGGCCGCCATGTCGTTTGCGCCGCAGAAACCGGCAGTGGCAAGACTCTCAGCTACCTCCTGCCGCTGCT
TCAACGGCTCTTGGGCCAGCCAAGCCTGGACTCCCTTCCTATCCCCGCGCCCCGAGGCCTGGTCCTTGTT
CCTTCCCGAGAATTGGCCCAACAGGTGCGGGCTGTGGCCCAACCCTTGGGCCGCTCCTTGGGCCTGCTGG
TGCGGGACCTGGAGGGAGGCCACGGCATGCGTAGGATCAGGCTGCAGCTGTCCAGACAGCCTTCAGCAGA
TGTGCTTGTGGCCACTCCAGGGGCTCTGTGGAAGGCCCTGAAAAGTCGACTGATCAGTCTGGAGCAACTC
TCCTTCTTGGTGTTGGATGAGGCAGACACACTGCTGGATGAAAGCTTCCTGGAACTGGTGGACTACATCT
TAGAGAAGAGCCACATAGCAGAAGGCCCAGCTGACTTGGAAGACCCCTTCAATCCCAAAGCTCAGTTAGT
GCTGGTAGGAGCCACATTTCCCGAAGGTGTAGGCCAGTTGCTGAATAAAGTCGCCAGCCCAGATGCTGTC
ACCACCATCACCAGCTCCAAGCTCCACTGTATCATGCCTCATGTGAAACAGACATTTCTGAGACTGAAGG
GAGCAGATAAGGTGGCCGAGCTGGTGCACATCCTCAAGCATCGTGACAGAGCAGAAAGGACTGGTCCCTC
AGGAACTGTTCTGGTGTTCTGTAATAGCTCCAGCACTGTGAACTGGCTGGGATATATTCTGGATGACCAC
AAAATCCAACACCTAAGGTTGCAGGGGCAAATGCCAGCCTTGATGAGGGTAGGAATCTTCCAGTCCTTCC
AGAAGAGCTCCCGAGACATACTTCTCTGCACAGACATAGCCTCTCGGGGCCTGGACAGCACTGGTGTGGA
GCTGGTTGTCAATTATGATTTCCCCCCAACGCTGCAAGATTACATCCACAGAGCAGGGAGAGTGGGCCGT
GTGGGGAGCGAGGTGCCAGGCACCGTCATCAGTTTTGTGACCCATCCCTGGGATGTGAGCCTGGTTCAGA
AGATTGAGCTGGCGGCTCGCCGAAGGAGAAGTCTTCCAGGACTAGCATCCTCGGTGAAAGAGCCTTTGCC
CCAAGCAACCTGA

Translation (540 aa):
MALTRPVRLFSLVTRLLLAPRRGLTVRSPDEPLPVVRIPVALQRQLEQRQSRRRNLPRPVLVRPGPLLVS
ARRPELNQPARLTLGRWERAPLASQGWKSRRARRDHFSIERAQQEAPAVRKLSSKGSFADLGLEPRVLHA
LQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLV
PSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLEQL
SFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAV
TTITSSKLHCIMPHVKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDH
KIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGR
VGSEVPGTVISFVTHPWDVSLVQKIELAARRRRSLPGLASSVKEPLPQAT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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