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Report for CCDS10878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10878.1 Public Homo sapiens 16 TMED6 24 110 108 CCDS HistoryNCBI Gene:146456Re-query CCDS DB by CCDS ID:10878.1Re-query CCDS DB by GeneID:146456See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288025.4 ENSP00000288025.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000288025.4Link to Ensembl Protein Viewer:ENSP00000288025.3Re-query CCDS DB by Nucleotide ID:ENST00000288025Re-query CCDS DB by Protein ID:ENSP00000288025
Original member Current member NCBI NM_144676.4 NP_653277.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144676.4Link to Protein Sequence:NP_653277.2Re-query CCDS DB by Nucleotide ID:NM_144676Re-query CCDS DB by Protein ID:NP_653277Link to BLAST:NP_653277.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653277.2 240 Q8WW62 240 100% 0 0

Chromosomal Locations for CCDS 10878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 69343407 69343640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69347788 69347936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69349525 69349651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69351541 69351753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGTCCCCTTTGCTCTTTGGGGCTGGGCTGGTCGTTCTGAATCTAGTGACGTCTGCCAGGAGCCAGAAGA
CAGAACCTCTAAGTGGCTCTGGGGACCAGCCACTCTTCCGTGGAGCTGATCGATATGACTTTGCCATCAT
GATACCTCCAGGAGGCACGGAATGCTTTTGGCAATTTGCCCACCAGACTGGATACTTCTATTTCAGTTAC
GAGGTTCAGCGGACAGTGGGGATGTCACATGACCGGCATGTTGCTGCCACGGCACATAACCCACAGGGAT
TTCTCATAGACACCTCCCAGGGTGTTCGGGGCCAGATTAACTTCTCTACCCAAGAGACAGGTTTTTATCA
GCTTTGTCTAAGTAATCAGCATAATCACTTCGGTTCTGTGCAAGTGTACCTCAACTTTGGGGTCTTCTAT
GAGGGGCCTGAGACTGATCACAAACAGAAGGAAAGAAAACAACTGAATGATACTCTGGATGCAATTGAGG
ACGGCACACAAAAGGTGCAGAACAATATCTTTCACATGTGGCGATACTACAACTTTGCCCGGATGAGGAA
AATGGCTGACTTTTTCCTTATCCAATCAAACTATAACTACGTGAACTGGTGGTCGACAGCCCAGAGCCTT
GTTATTATTCTTTCTGGGATCCTGCAACTGTATTTCTTGAAGCGTCTCTTCAATGTTCCAACAACTACAG
ATACAAAGAAGCCAAGATGCTAA

Translation (240 aa):
MSPLLFGAGLVVLNLVTSARSQKTEPLSGSGDQPLFRGADRYDFAIMIPPGGTECFWQFAHQTGYFYFSY
EVQRTVGMSHDRHVAATAHNPQGFLIDTSQGVRGQINFSTQETGFYQLCLSNQHNHFGSVQVYLNFGVFY
EGPETDHKQKERKQLNDTLDAIEDGTQKVQNNIFHMWRYYNFARMRKMADFFLIQSNYNYVNWWSTAQSL
VIILSGILQLYFLKRLFNVPTTTDTKKPRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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