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Report for CCDS10890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10890.1 Public Homo sapiens 16 ST3GAL2 24 110 108 CCDS HistoryNCBI Gene:6483Re-query CCDS DB by CCDS ID:10890.1Re-query CCDS DB by GeneID:6483See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10890.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342907.3 ENSP00000345477.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342907.3Link to Ensembl Protein Viewer:ENSP00000345477.2Re-query CCDS DB by Nucleotide ID:ENST00000342907Re-query CCDS DB by Protein ID:ENSP00000345477
Original member Current member EBI ENST00000393640.8 ENSP00000377257.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393640.8Link to Ensembl Protein Viewer:ENSP00000377257.4Re-query CCDS DB by Nucleotide ID:ENST00000393640Re-query CCDS DB by Protein ID:ENSP00000377257
Original member Current member NCBI NM_006927.4 NP_008858.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006927.4Link to Protein Sequence:NP_008858.1Re-query CCDS DB by Nucleotide ID:NM_006927Re-query CCDS DB by Protein ID:NP_008858Link to BLAST:NP_008858.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008858.1 350 Q16842 350 100% 0 0

Chromosomal Locations for CCDS 10890.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 70381689 70381862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70382805 70382924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70383190 70383235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70388367 70388546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70394982 70395175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70398192 70398530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGAAGTGCTCCCTGCGGGTGTGGTTCCTCTCCGTGGCCTTCCTGCTGGTGTTCATCATGTCCCTGCTCT
TCACCTACTCGCACCACAGCATGGCCACGCTCCCCTACCTGGACTCAGGGGCCCTGGATGGGACGCACCG
GGTGAAGCTGGTGCCCGGCTATGCCGGCCTGCAGCGCCTCAGCAAGGAGAGGCTCTCGGGCAAGAGCTGT
GCCTGTCGCCGCTGCATGGGCGATGCCGGTGCCTCCGACTGGTTTGACAGCCACTTTGACGGTAACATTT
CCCCCGTCTGGACCCGAGAGAACATGGATCTTCCACCGGACGTCCAGAGGTGGTGGATGATGCTGCAGCC
CCAGTTCAAGTCACACAACACCAATGAGGTGCTGGAGAAGCTGTTCCAGATAGTGCCTGGCGAGAACCCC
TACCGCTTCCGGGACCCCCACCAGTGCCGGCGCTGTGCCGTGGTGGGGAACTCGGGCAACCTGCGGGGCT
CTGGCTATGGGCAGGACGTGGACGGGCACAACTTCATCATGAGGATGAATCAGGCGCCAACCGTGGGCTT
TGAGCAGGATGTTGGCAGCCGAACCACCCACCATTTCATGTACCCTGAGAGTGCCAAGAACCTGCCCGCC
AACGTCAGCTTCGTGCTGGTGCCCTTCAAGGTCCTGGACCTTCTGTGGATCGCCAGCGCCTTGTCCACGG
GGCAGATCCGATTCACCTACGCCCCAGTGAAGTCCTTCCTTCGAGTGGATAAAGAAAAGGTCCAGATCTA
CAACCCAGCCTTCTTCAAGTATATCCACGACAGGTGGACAGAGCATCACGGGCGGTACCCTTCCACGGGG
ATGCTGGTGCTTTTCTTTGCCCTGCATGTGTGTGATGAGGTGAACGTGTACGGGTTCGGGGCCGACAGCC
GGGGCAACTGGCACCACTACTGGGAGAACAACCGGTACGCGGGCGAGTTCCGGAAGACTGGCGTGCACGA
CGCGGACTTCGAGGCCCACATCATCGACATGCTGGCCAAGGCCAGCAAGATCGAAGTCTACCGGGGCAAC
TGA

Translation (350 aa):
MKCSLRVWFLSVAFLLVFIMSLLFTYSHHSMATLPYLDSGALDGTHRVKLVPGYAGLQRLSKERLSGKSC
ACRRCMGDAGASDWFDSHFDGNISPVWTRENMDLPPDVQRWWMMLQPQFKSHNTNEVLEKLFQIVPGENP
YRFRDPHQCRRCAVVGNSGNLRGSGYGQDVDGHNFIMRMNQAPTVGFEQDVGSRTTHHFMYPESAKNLPA
NVSFVLVPFKVLDLLWIASALSTGQIRFTYAPVKSFLRVDKEKVQIYNPAFFKYIHDRWTEHHGRYPSTG
MLVLFFALHVCDEVNVYGFGADSRGNWHHYWENNRYAGEFRKTGVHDADFEAHIIDMLAKASKIEVYRGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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