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Report for CCDS1093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1093.1 Public Homo sapiens 1 SLC50A1 24 110 108 CCDS HistoryNCBI Gene:55974Re-query CCDS DB by CCDS ID:1093.1Re-query CCDS DB by GeneID:55974See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1093.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368404.9 ENSP00000357389.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368404.9Link to Ensembl Protein Viewer:ENSP00000357389.4Re-query CCDS DB by Nucleotide ID:ENST00000368404Re-query CCDS DB by Protein ID:ENSP00000357389
Original member Current member NCBI NM_018845.4 NP_061333.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018845.4Link to Protein Sequence:NP_061333.2Re-query CCDS DB by Nucleotide ID:NM_018845Re-query CCDS DB by Protein ID:NP_061333Link to BLAST:NP_061333.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061333.2 221 Q9BRV3-1 221 100% 0 0

Chromosomal Locations for CCDS 1093.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155135912 155135991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155136299 155136376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155136828 155136951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155137561 155137722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155137979 155138098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155138180 155138281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGAGGCGGGCGGCTTTCTGGACTCGCTCATTTACGGAGCATGCGTGGTCTTCACCCTTGGCATGTTCT
CCGCCGGCCTCTCGGACCTCAGGCACATGCGAATGACCCGGAGTGTGGACAACGTCCAGTTCCTGCCCTT
TCTCACCACGGAAGTCAACAACCTGGGCTGGCTGAGTTATGGGGCTTTGAAGGGAGACGGGATCCTCATC
GTCGTCAACACAGTGGGTGCTGCGCTTCAGACCCTGTATATCTTGGCATATCTGCATTACTGCCCTCGGA
AGCGTGTTGTGCTCCTACAGACTGCAACCCTGCTAGGGGTCCTTCTCCTGGGTTATGGCTACTTTTGGCT
CCTGGTACCCAACCCTGAGGCCCGGCTTCAGCAGTTGGGCCTCTTCTGCAGTGTCTTCACCATCAGCATG
TACCTCTCACCACTGGCTGACTTGGCTAAGGTGATTCAAACTAAATCAACCCAATGTCTCTCCTACCCAC
TCACCATTGCTACCCTTCTCACCTCTGCCTCCTGGTGCCTCTATGGGTTTCGACTCAGAGATCCCTATAT
CATGGTGTCCAACTTTCCAGGAATCGTCACCAGCTTTATCCGCTTCTGGCTTTTCTGGAAGTACCCCCAG
GAGCAAGACAGGAACTACTGGCTCCTGCAAACCTGA

Translation (221 aa):
MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILI
VVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISM
YLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQ
EQDRNYWLLQT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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