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Report for CCDS10943.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10943.2 Public Homo sapiens 16 DNAAF1 24 110 108 CCDS HistoryNCBI Gene:123872Re-query CCDS DB by CCDS ID:10943.2Re-query CCDS DB by GeneID:123872See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10943.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378553.10 ENSP00000367815.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378553.10Link to Ensembl Protein Viewer:ENSP00000367815.5Re-query CCDS DB by Nucleotide ID:ENST00000378553Re-query CCDS DB by Protein ID:ENSP00000367815
Original member Current member NCBI NM_178452.6 NP_848547.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178452.6Link to Protein Sequence:NP_848547.4Re-query CCDS DB by Nucleotide ID:NM_178452Re-query CCDS DB by Protein ID:NP_848547Link to BLAST:NP_848547.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848547.4 725 Q8NEP3-1 725 100% 0 0

Chromosomal Locations for CCDS 10943.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 84145441 84145564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84149007 84149142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84150251 84150342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84154577 84154798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84155583 84155749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84159675 84159796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84165783 84165949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84169859 84170356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84172260 84172375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84174669 84174722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84175933 84176299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84177729 84177841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGCACCCTGAGCCCTCGGAGCCTGCGACAGGTGGTGCAGCAGAGCTGGATTGCGCGCAGGAGCCCGGCG
TGGAGGAGTCTGCGGGTGACCACGGGAGCGCAGGCCGAGGGGGCTGCAAGGAAGAAATTAATGATCCTAA
GGAAATATGTGTGGGTTCTTCTGACACATCCTACCACAGCCAGCAGAAACAGAGTGGTGATAATGGGTCA
GGTGGTCACTTCGCACACCCAAGAGAAGACAGGGAAGATCGGGGCCCCAGAATGACTAAAAGTTCCCTGC
AAAAACTCTGCAAGCAGCACAAGCTTTATATTACCCCAGCATTGAATGATACGCTGTATTTACACTTTAA
AGGTTTTGATCGCATTGAGAACCTGGAAGAGTACACAGGGCTGCGCTGTCTCTGGCTGCAGAGCAATGGA
ATACAGAAAATCGAAAACCTGGAGGCCCAAACTGAGTTGCGTTGCCTCTTCTTGCAAATGAACTTGCTCC
GTAAAATTGAGAACCTGGAACCTCTGCAGAAACTGGATGCTCTTAACCTCAGCAACAATTACATCAAGAC
CATTGAAAACCTCTCCTGCCTCCCAGTCCTGAACACATTGCAGATGGCCCACAATCACCTGGAGACCGTG
GAGGACATTCAGCATCTACAAGAGTGTTTGAGGCTTTGTGTCCTTGACCTTTCGCACAACAAGCTGAGTG
ACCCGGAGATCCTGAGCATTCTGGAAAGCATGCCCGATTTGCGTGTACTGAATTTGATGGGAAACCCGGT
TATCAGACAGATTCCTAATTACAGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCTGGATGAT
AGACCAGTGTTTCCAAAGGACAGAGCTTGTGCGGAGGCCTGGGCTAGGGGAGGGTACGCAGCTGAAAAGG
AGGAGAGACAGCAGTGGGAGAGCAGGGAGCGGAAGAAGATCACAGACAGCATTGAAGCCTTGGCCATGAT
CAAGCAGCGGGCAGAGGAGAGGAAAAGACAGAGAGAGAGTCAAGAGAGAGGGGAGATGACATCTTCAGAT
GATGGTGAGAATGTGCCCGCCAGTGCGGAAGGCAAGGAGGAGCCTCCCGGGGACAGAGAAACAAGGCAGA
AGATGGAGCTATTTGTTAAGGAAAGCTTTGAGGCCAAGGACGAGCTCTGCCCGGAAAAGCCAAGTGGAGA
GGAGCCGCCTGTGGAGGCTAAAAGAGAGGATGGAGGTCCAGAGCCAGAGGGGACCCTCCCAGCTGAGACC
CTGCTACTGTCGTCACCTGTGGAGGTTAAAGGAGAGGACGGAGATGGAGAGCCAGAGGGGACCCTCCCAG
CTGAGGCCCCACCACCCCCGCCACCTGTGGAGGTTAAAGGAGAGGATGGAGATCAAGAGCCAGAGGGGAC
CCTCCCAGCTGAGACCCTGCTACTGTCACCGCCTGTGAAGGTTAAAGGAGAGGATGGAGATCGAGAGCCA
GAGGGGACCCTCCCAGCTGAGGCCCCACCACCACCGCCCCTGGGAGCTGCCAGGGAAGAACCGACTCCCC
AGGCTGTGGCCACTGAGGGTGTATTCGTTACAGAACTTGATGGAACGAGAACGGAAGATTTAGAAACCAT
TAGACTGGAGACAAAGGAGACATTCTGCATTGATGACCTACCTGACTTGGAAGATGATGATGAAACAGGC
AAATCTCTGGAAGACCAGAATATGTGCTTTCCGAAGATTGAGGTCATCTCGAGCTTGAGTGATGACAGTG
ACCCTGAACTGGACTACACGTCACTCCCTGTGCTGGAAAACCTCCCCACAGACACTCTGTCAAATATATT
TGCAGTCTCTAAAGACACCTCAAAGGCGGCTCGGGTGCCCTTCACAGACATCTTTAAAAAAGAAGCTAAG
AGGGACTTGGAAATCCGAAAACAAGACACCAAGTCCCCAAGACCCCTGATCCAGGAGCTCAGCGACGAGG
ACCCCTCTGGCCAGCTACTGATGCCCCCCACCTGCCAAAGAGATGCTGCACCACTCACTTCCAGTGGAGA
CAGGGACAGCGACTTCCTTGCAGCCTCTTCTCCGGTGCCGACTGAGAGCGCCGCCACACCCCCAGAGACG
TGTGTCGGAGTTGCCCAGCCCAGCCAAGCTCTGCCCACGTGGGACCTCACTGCATTCCCAGCACCGAAAG
CATCATAG

Translation (725 aa):
MHPEPSEPATGGAAELDCAQEPGVEESAGDHGSAGRGGCKEEINDPKEICVGSSDTSYHSQQKQSGDNGS
GGHFAHPREDREDRGPRMTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNG
IQKIENLEAQTELRCLFLQMNLLRKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHLETV
EDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRQIPNYRRTVTVRLKHLTYLDD
RPVFPKDRACAEAWARGGYAAEKEERQQWESRERKKITDSIEALAMIKQRAEERKRQRESQERGEMTSSD
DGENVPASAEGKEEPPGDRETRQKMELFVKESFEAKDELCPEKPSGEEPPVEAKREDGGPEPEGTLPAET
LLLSSPVEVKGEDGDGEPEGTLPAEAPPPPPPVEVKGEDGDQEPEGTLPAETLLLSPPVKVKGEDGDREP
EGTLPAEAPPPPPLGAAREEPTPQAVATEGVFVTELDGTRTEDLETIRLETKETFCIDDLPDLEDDDETG
KSLEDQNMCFPKIEVISSLSDDSDPELDYTSLPVLENLPTDTLSNIFAVSKDTSKAARVPFTDIFKKEAK
RDLEIRKQDTKSPRPLIQELSDEDPSGQLLMPPTCQRDAAPLTSSGDRDSDFLAASSPVPTESAATPPET
CVGVAQPSQALPTWDLTAFPAPKAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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