NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10948.1 Public Homo sapiens 16 KLHL36 24 110 108 CCDS HistoryNCBI Gene:79786Re-query CCDS DB by CCDS ID:10948.1Re-query CCDS DB by GeneID:79786See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10948.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000564996.6 ENSP00000456743.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000564996.6Link to Ensembl Protein Viewer:ENSP00000456743.1Re-query CCDS DB by Nucleotide ID:ENST00000564996Re-query CCDS DB by Protein ID:ENSP00000456743
Original member Current member NCBI NM_024731.4 NP_079007.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024731.4Link to Protein Sequence:NP_079007.2Re-query CCDS DB by Nucleotide ID:NM_024731Re-query CCDS DB by Protein ID:NP_079007Link to BLAST:NP_079007.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079007.2 616 Q8N4N3-1 616 100% 0 0

Chromosomal Locations for CCDS 10948.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 84650868 84650930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84656871 84657944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84659760 84659917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84661578 84662133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1851 nt):
ATGATGGAGGGAAGCAGGCAGACGCGAGTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTATACC
GCTGGGCCGACCACTCAAGCACGGTGCTGCAGCGGCTGAACGAGCAGCGTCTCCGCGGGCTCTTCTGCGA
CGTCGTCCTGGTGGCCGATGAGCAGCGTGTGCCAGCCCATCGCAACCTGCTGGCCGTGTGCAGCGACTAC
TTCAACTCCATGTTCACCATCGGCATGCGGGAAGCTTTCCAGAAGGAGGTGGAGCTGATCGGCGCCTCCT
ACATTGGGCTCAAGGCCGTGGTGGACTTCCTGTACGGCGGGGAGCTGGTGCTGGATGGCGGCAACATTGA
CTACGTCCTGGAGACGGCTCACCTGCTGCAGATCTGGACGGTGGTAGACTTCTGCTGTGAGTACCTGGAG
CAGGAGGTGAGCGAGGACAACTACCTGTACCTGCAGGAGCTGGCCTCCATCTACAGCCTCAAGCGGCTTG
ATGCCTTCATCGATGGCTTCATCCTGAACCACTTCGGCACGCTGTCCTTTACGCCCGACTTCCTGCAGAA
CGTCTCCATGCAGAAGCTGTGTGTCTACCTGAGCAGCAGCGAGGTGCAGCGGGAGTGTGAGCACGACCTC
CTGCAGGCCGCCCTGCAGTGGCTGACGCAGCAGCCCGAGCGCGAGGCCCACGCCCGCCAGGTGCTGGAGA
ACATCCACTTCCCGCTCATCCCCAAGAACGACCTGCTGCACCGCGTCAAGCCGGCCGTGTGCTCGCTGCT
GCCCAAGGAGGCCAACTGCGAGGGCTTCATCGAGGAGGCCGTGCGCTACCACAACAACCTGGCGGCCCAG
CCCGTCATGCAGACCAAGCGCACGGCGCTGCGCACCAACCAGGAGCGCCTGCTGTTTGTGGGCGGCGAGG
TCTCCGAGCGGTGTCTGGAGCTCAGTGACGACACCTGCTACCTGGACGCCAAGAGCGAGCAGTGGGTCAA
AGAGACGCCGCTGCCCGCCCGGCGGAGCCACCACTGTGTCGCGGTGCTGGGGGGCTTCATCTTCATCGCC
GGCGGCAGCTTCTCACGGGACAACGGAGGGGATGCGGCCTCCAATCTTCTTTATAGGTATGACCCCCGCT
GTAAACAGTGGATCAAGGTGGCCTCCATGAACCAGCGCCGTGTGGATTTCTACCTTGCCTCCATCGAAGA
CATGCTGGTGGCCATCGGCGGCCGGAATGAGAACGGAGCGCTCTCTTCAGTAGAGACGTACAGTCCCAAG
ACTGACTCCTGGTCCTATGTGGCCGGCTTGCCAAGGTTCACGTACGGCCACGCGGGCACCATCTACAAAG
ACTTCGTGTACATCTCGGGGGGCCACGACTACCAAATTGGCCCCTACCGCAAGAACCTGCTATGCTACGA
CCACCGGACAGACGTGTGGGAGGAGCGGCGGCCCATGACCACGGCGCGCGGCTGGCACAGCATGTGCAGC
CTGGGTGACAGCATCTACTCCATCGGGGGCAGCGATGACAACATCGAGTCCATGGAGCGCTTCGACGTGC
TGGGCGTGGAGGCCTACAGCCCGCAGTGCAACCAGTGGACCCGCGTGGCGCCGCTGCTGCACGCCAACAG
CGAGTCGGGCGTGGCAGTGTGGGAGGGCCGCATCTACATCCTGGGCGGCTACAGCTGGGAGAACACTGCC
TTCTCCAAGACCGTGCAGGTGTACGACCGCGAGGCCGACAAGTGGAGCAGGGGCGTCGACCTGCCCAAGG
CCATCGCTGGCGGGTCCGCCTGTGTCTGCGCCCTGGAGCCACGGCCAGAGGACAAGAAGAAGAAAGGCAA
AGGCAAGAGGCACCAGGACCGGGGCCAGTGA

Translation (616 aa):
MMEGSRQTRVSRPYKISESSKVYRWADHSSTVLQRLNEQRLRGLFCDVVLVADEQRVPAHRNLLAVCSDY
FNSMFTIGMREAFQKEVELIGASYIGLKAVVDFLYGGELVLDGGNIDYVLETAHLLQIWTVVDFCCEYLE
QEVSEDNYLYLQELASIYSLKRLDAFIDGFILNHFGTLSFTPDFLQNVSMQKLCVYLSSSEVQRECEHDL
LQAALQWLTQQPEREAHARQVLENIHFPLIPKNDLLHRVKPAVCSLLPKEANCEGFIEEAVRYHNNLAAQ
PVMQTKRTALRTNQERLLFVGGEVSERCLELSDDTCYLDAKSEQWVKETPLPARRSHHCVAVLGGFIFIA
GGSFSRDNGGDAASNLLYRYDPRCKQWIKVASMNQRRVDFYLASIEDMLVAIGGRNENGALSSVETYSPK
TDSWSYVAGLPRFTYGHAGTIYKDFVYISGGHDYQIGPYRKNLLCYDHRTDVWEERRPMTTARGWHSMCS
LGDSIYSIGGSDDNIESMERFDVLGVEAYSPQCNQWTRVAPLLHANSESGVAVWEGRIYILGGYSWENTA
FSKTVQVYDREADKWSRGVDLPKAIAGGSACVCALEPRPEDKKKKGKGKRHQDRGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH