NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10955.1 Public Homo sapiens 16 COX4I1 24 110 108 CCDS HistoryNCBI Gene:1327Re-query CCDS DB by CCDS ID:10955.1Re-query CCDS DB by GeneID:1327See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253452.8 ENSP00000253452.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253452.8Link to Ensembl Protein Viewer:ENSP00000253452.2Re-query CCDS DB by Nucleotide ID:ENST00000253452Re-query CCDS DB by Protein ID:ENSP00000253452
Original member Current member EBI ENST00000561569.5 ENSP00000457015.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561569.5Link to Ensembl Protein Viewer:ENSP00000457015.1Re-query CCDS DB by Nucleotide ID:ENST00000561569Re-query CCDS DB by Protein ID:ENSP00000457015
Original member Current member EBI ENST00000562336.5 ENSP00000457513.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000562336.5Link to Ensembl Protein Viewer:ENSP00000457513.1Re-query CCDS DB by Nucleotide ID:ENST00000562336Re-query CCDS DB by Protein ID:ENSP00000457513
Original member Current member NCBI NM_001318786.3 NP_001305715.1 Accepted alive Link to Nucleotide Sequence:NM_001318786.3Link to Protein Sequence:NP_001305715.1Re-query CCDS DB by Nucleotide ID:NM_001318786Re-query CCDS DB by Protein ID:NP_001305715Link to BLAST:NP_001305715.1
Original member Current member NCBI NM_001861.6 NP_001852.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001861.6Link to Protein Sequence:NP_001852.1Re-query CCDS DB by Nucleotide ID:NM_001861Re-query CCDS DB by Protein ID:NP_001852Link to BLAST:NP_001852.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305715.1 169 P13073 169 100% 0 0
NP_001852.1 169 P13073 169 100% 0 0

Chromosomal Locations for CCDS 10955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 85801206 85801278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85804937 85805104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85805733 85805864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85806738 85806874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTC
ATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCC
GGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGG
AGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGA
ACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGT
TATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAG
CAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAA
AGAACGAGTGGAAGAAGTGA

Translation (169 aa):
MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASW
SSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAK
QTKRMLDMKVNPIQGLASKWDYEKNEWKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH