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Report for CCDS10972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10972.1 Public Homo sapiens 16 CBFA2T3 24 110 108 CCDS HistoryNCBI Gene:863Re-query CCDS DB by CCDS ID:10972.1Re-query CCDS DB by GeneID:863See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10972.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268679.9 ENSP00000268679.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268679.9Link to Ensembl Protein Viewer:ENSP00000268679.4Re-query CCDS DB by Nucleotide ID:ENST00000268679Re-query CCDS DB by Protein ID:ENSP00000268679
Original member Current member NCBI NM_005187.6 NP_005178.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005187.6Link to Protein Sequence:NP_005178.4Re-query CCDS DB by Nucleotide ID:NM_005187Re-query CCDS DB by Protein ID:NP_005178Link to BLAST:NP_005178.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005178.4 653 O75081-1 653 100% 0 0

Chromosomal Locations for CCDS 10972.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88876976 88877275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88879270 88879460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88880720 88880788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88881291 88881489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88882676 88882761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88885046 88885269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88885961 88886142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88891882 88891971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88892244 88892485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88898078 88898152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88901504 88901656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88976657 88976807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGCCGGCTTCAAGACTGAGGGACAGGGCAGCCAGTTCAGCCTCGGGATCCACCTGTGGCTCCATGTCCC
AGACGCACCCTGTGCTGGAGAGCGGCCTCCTGGCATCTGCCGGCTGCTCCGCACCCCGGGGTCCCAGGAA
GGGCGGCCCAGCCCCAGTGGACAGGAAAGCTAAGGCCTCAGCGATGCCGGACTCCCCAGCGGAGGTGAAG
ACGCAGCCCCGGTCCACACCCCCCAGCATGCCGCCCCCACCGCCTGCCGCATCCCAGGGGGCCACACGCC
CCCCCTCCTTCACGCCACACACACATCGAGAGGACGGGCCTGCGACGCTGCCCCACGGCCGTTTTCATGG
CTGCTTAAAATGGTCTATGGTCTGTCTCTTGATGAACGGCAGCAGCCACTCACCAACAGCCATCAATGGT
GCACCGTGCACACCCAACGGCTTCAGCAATGGCCCGGCCACCTCGTCCACAGCCTCCTTGTCCACACAGC
ACCTGCCCCCAGCCTGCGGGGCCCGGCAGCTCAGCAAGCTCAAGCGCTTCCTCACCACACTGCAGCAGTT
TGGCAGCGACATCTCCCCAGAGATTGGGGAGCGCGTGCGCACACTGGTGCTGGGCCTGGTGAACTCGACA
TTGACGATCGAGGAGTTTCATTCCAAGCTTCAGGAGGCCACCAACTTCCCTCTGCGGCCGTTTGTCATTC
CCTTCCTGAAGGCAAACCTGCCCTTGCTGCAGCGGGAGCTCCTGCACTGTGCACGCCTGGCCAAGCAGAC
GCCCGCCCAGTACTTGGCCCAGCATGAGCAGCTCCTGCTGGACGCCAGCGCCTCCTCCCCCATCGACTCC
TCAGAGCTGCTACTGGAAGTCAACGAGAACGGCAAGAGGAGGACGCCCGACAGGACCAAAGAGAACGGGT
CAGACCGCGACCCGCTGCACCCCGAGCACCTCAGCAAACGGCCATGCACCCTGAACCCTGCCCAGCGCTA
CAGCCCCAGCAACGGGCCACCGCAGCCCACACCGCCGCCGCACTACCGCCTGGAGGACATAGCCATGGCC
CACCACTTCCGAGATGCCTACCGCCACCCAGACCCCCGGGAGCTACGAGAGCGCCATCGGCCGCTTGTGG
TGCCTGGGTCCCGGCAGGAAGAAGTGATCGACCACAAGCTCACAGAGCGTGAGTGGGCAGAAGAGTGGAA
GCACCTCAACAACCTCCTGAACTGCATCATGGACATGGTGGAGAAGACGCGGCGCTCGCTCACGGTGCTG
CGCAGGTGCCAGGAGGCCGACCGCGAGGAGCTCAACCACTGGGCGCGGCGCTACAGCGACGCCGAGGACA
CAAAGAAGGGCCCCGCTCCCGCCGCGGCCCGGCCCCGCAGCAGCTCCGCCGGTCCCGAAGGGCCTCAGCT
AGACGTGCCTCGCGAGTTCCTGCCGAGGACCCTCACCGGCTACGTGCCTGAGGACATCTGGAGGAAGGCT
GAAGAGGCCGTGAATGAGGTGAAGCGGCAGGCCATGTCGGAGCTGCAGAAAGCCGTGTCGGACGCGGAGC
GCAAAGCGCACGAGCTCATCACCACGGAGCGTGCCAAGATGGAGCGGGCCCTGGCCGAGGCGAAGCGGCA
GGCCTCCGAGGACGCCCTGACGGTCATCAACCAGCAGGAGGACTCCAGCGAGAGCTGCTGGAACTGCGGG
CGGAAAGCCAGTGAGACGTGCAGCGGCTGCAACGCGGCACGCTACTGCGGGTCCTTCTGCCAGCATCGGG
ACTGGGAGAAGCATCACCACGTGTGTGGCCAGAGCCTGCAGGGCCCCACAGCCGTGGTGGCCGACCCGGT
GCCTGGACCGCCCGAAGCCGCCCACAGCCTGGGCCCCTCCCTGCCTGTGGGTGCTGCCAGCCCCAGCGAA
GCCGGCTCTGCGGGGCCTTCTCGCCCCGGCTCCCCCAGCCCACCTGGCCCACTGGACACCGTGCCCCGCT
GA

Translation (653 aa):
MPASRLRDRAASSASGSTCGSMSQTHPVLESGLLASAGCSAPRGPRKGGPAPVDRKAKASAMPDSPAEVK
TQPRSTPPSMPPPPPAASQGATRPPSFTPHTHREDGPATLPHGRFHGCLKWSMVCLLMNGSSHSPTAING
APCTPNGFSNGPATSSTASLSTQHLPPACGARQLSKLKRFLTTLQQFGSDISPEIGERVRTLVLGLVNST
LTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQTPAQYLAQHEQLLLDASASSPIDS
SELLLEVNENGKRRTPDRTKENGSDRDPLHPEHLSKRPCTLNPAQRYSPSNGPPQPTPPPHYRLEDIAMA
HHFRDAYRHPDPRELRERHRPLVVPGSRQEEVIDHKLTEREWAEEWKHLNNLLNCIMDMVEKTRRSLTVL
RRCQEADREELNHWARRYSDAEDTKKGPAPAAARPRSSSAGPEGPQLDVPREFLPRTLTGYVPEDIWRKA
EEAVNEVKRQAMSELQKAVSDAERKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSESCWNCG
RKASETCSGCNAARYCGSFCQHRDWEKHHHVCGQSLQGPTAVVADPVPGPPEAAHSLGPSLPVGAASPSE
AGSAGPSRPGSPSPPGPLDTVPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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