NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10976.1 Public Homo sapiens 16 CDH15 24 110 108 CCDS HistoryNCBI Gene:1013Re-query CCDS DB by CCDS ID:10976.1Re-query CCDS DB by GeneID:1013See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289746.3 ENSP00000289746.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289746.3Link to Ensembl Protein Viewer:ENSP00000289746.2Re-query CCDS DB by Nucleotide ID:ENST00000289746Re-query CCDS DB by Protein ID:ENSP00000289746
Original member Current member NCBI NM_004933.3 NP_004924.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004933.3Link to Protein Sequence:NP_004924.1Re-query CCDS DB by Nucleotide ID:NM_004933Re-query CCDS DB by Protein ID:NP_004924Link to BLAST:NP_004924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004924.1 814 P55291 814 100% 0 0

Chromosomal Locations for CCDS 10976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89171832 89171873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89179416 89179574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89180200 89180355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89183548 89183692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89185173 89185333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89187429 89187557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89188100 89188285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89190243 89190496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89191330 89191472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89191655 89191894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89192205 89192444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89193470 89193606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89193755 89193913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89194862 89195155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGGACGCCGCGTTCCTCCTCGTCCTCGGGCTGTTGGCCCAGAGCCTCTGCCTGTCTTTGGGGGTTCCTG
GATGGAGGAGGCCCACCACCCTGTACCCCTGGCGCCGGGCGCCTGCCCTGAGCCGCGTGCGGAGGGCCTG
GGTCATCCCCCCGATCAGCGTATCCGAGAACCACAAGCGTCTCCCCTACCCCCTGGTTCAGATCAAGTCG
GACAAGCAGCAGCTGGGCAGCGTCATCTACAGCATCCAGGGACCCGGCGTGGATGAGGAGCCCCGGGGCG
TCTTCTCTATCGACAAGTTCACAGGGAAGGTCTTCCTCAATGCCATGCTGGACCGCGAGAAGACTGATCG
CTTCAGGCTAAGAGCGTTTGCCCTGGACCTGGGAGGATCCACCCTGGAGGACCCCACGGACCTGGAGATT
GTAGTTGTGGATCAGAATGACAACCGGCCAGCCTTCCTGCAGGAGGCGTTCACTGGCCGCGTGCTGGAGG
GTGCAGTCCCAGGCACCTATGTGACCAGGGCAGAGGCCACAGATGCCGACGACCCCGAGACGGACAACGC
AGCGCTGCGGTTCTCCATCCTGCAGCAGGGCAGCCCCGAGCTCTTCAGCATCGACGAGCTCACAGGAGAG
ATCCGCACAGTGCAAGTGGGGCTGGACCGCGAGGTGGTCGCGGTGTACAATCTGACCCTGCAGGTGGCGG
ACATGTCTGGAGACGGCCTCACAGCCACTGCCTCAGCCATCATCACCCTTGATGACATCAATGACAATGC
CCCCGAGTTCACCAGGGATGAGTTCTTCATGGAGGCCATAGAGGCCGTCAGCGGAGTGGATGTGGGACGC
CTGGAAGTGGAGGACAGGGACCTGCCAGGCTCCCCAAACTGGGTGGCCAGGTTCACCATCCTGGAAGGCG
ACCCCGATGGGCAGTTCACCATCCGCACGGACCCCAAGACCAACGAGGGTGTTCTGTCCATTGTGAAGGC
CCTGGACTATGAGAGCTGTGAACACTACGAACTCAAAGTGTCGGTGCAGAATGAGGCCCCGCTGCAGGCG
GCTGCCCTTAGGGCTGAGCGGGGCCAGGCCAAGGTCCGCGTGCATGTGCAGGACACCAACGAGCCCCCCG
TGTTCCAGGAGAACCCACTTCGGACCAGCCTAGCAGAGGGGGCACCCCCAGGCACTCTGGTGGCCACCTT
CTCTGCCCGGGACCCTGACACAGAGCAGCTGCAGAGGCTCAGCTACTCCAAGGACTACGACCCGGAAGAC
TGGCTGCAAGTGGACGCAGCCACTGGCCGGATCCAGACCCAGCACGTGCTCAGCCCGGCGTCCCCCTTCC
TCAAGGGCGGCTGGTACAGAGCCATCGTCCTGGCCCAGGATGACGCCTCCCAGCCCCGCACCGCCACCGG
CACCCTGTCCATCGAGATCCTGGAGGTGAACGACCATGCACCTGTGCTGGCCCCGCCGCCGCCGGGCAGC
CTGTGCAGCGAGCCACACCAAGGCCCAGGCCTCCTCCTGGGCGCCACGGATGAGGACCTGCCCCCCCACG
GGGCCCCCTTCCACTTCCAGCTGAGCCCCAGGCTCCCAGAGCTCGGCCGGAACTGGAGCCTCAGCCAGGT
CAACGTGAGCCACGCGCGCCTGCGGCCGCGACACCAGGTCCCCGAAGGCCTGCACCGCCTCAGCCTGCTG
CTCCGGGACTCGGGGCAGCCGCCCCAGCAGCGCGAGCAGCCTCTGAACGTGACCGTGTGCCGCTGCGGCA
AGGACGGCGTCTGCCTGCCGGGGGCCGCAGCGCTGCTGGCGGGGGGCACAGGCCTCAGCCTGGGCGCACT
GGTCATCGTGCTGGCCAGCGCCCTCCTGCTGCTGGTGCTGGTCCTGCTCGTGGCACTCCGGGCGCGGTTC
TGGAAGCAGTCTCGGGGCAAGGGGCTGCTGCACGGCCCCCAGGACGACCTTCGAGACAATGTCCTCAACT
ACGATGAGCAAGGAGGCGGGGAGGAGGACCAGGACGCCTACGACATCAGCCAGCTGCGTCACCCGACAGC
GCTGAGCCTGCCTCTGGGACCGCCGCCACTTCGCAGAGATGCCCCGCAGGGCCGCCTGCACCCCCAGCCA
CCCCGAGTGCTGCCCACCAGCCCCCTGGACATCGCCGACTTCATCAATGATGGCTTGGAGGCTGCAGATA
GTGACCCCAGTGTGCCGCCTTACGACACAGCCCTCATCTATGACTACGAGGGTGACGGCTCGGTGGCGGG
GACGCTGAGCTCCATCCTGTCCAGCCAGGGCGATGAGGACCAGGACTACGACTACCTCAGAGACTGGGGG
CCCCGCTTCGCCCGGCTGGCAGACATGTATGGGCACCCGTGCGGGTTGGAGTACGGGGCCAGATGGGACC
ACCAGGCCAGGGAGGGTCTTTCTCCTGGGGCACTGCTACCCAGACACAGAGGCCGGACAGCCTGA

Translation (814 aa):
MDAAFLLVLGLLAQSLCLSLGVPGWRRPTTLYPWRRAPALSRVRRAWVIPPISVSENHKRLPYPLVQIKS
DKQQLGSVIYSIQGPGVDEEPRGVFSIDKFTGKVFLNAMLDREKTDRFRLRAFALDLGGSTLEDPTDLEI
VVVDQNDNRPAFLQEAFTGRVLEGAVPGTYVTRAEATDADDPETDNAALRFSILQQGSPELFSIDELTGE
IRTVQVGLDREVVAVYNLTLQVADMSGDGLTATASAIITLDDINDNAPEFTRDEFFMEAIEAVSGVDVGR
LEVEDRDLPGSPNWVARFTILEGDPDGQFTIRTDPKTNEGVLSIVKALDYESCEHYELKVSVQNEAPLQA
AALRAERGQAKVRVHVQDTNEPPVFQENPLRTSLAEGAPPGTLVATFSARDPDTEQLQRLSYSKDYDPED
WLQVDAATGRIQTQHVLSPASPFLKGGWYRAIVLAQDDASQPRTATGTLSIEILEVNDHAPVLAPPPPGS
LCSEPHQGPGLLLGATDEDLPPHGAPFHFQLSPRLPELGRNWSLSQVNVSHARLRPRHQVPEGLHRLSLL
LRDSGQPPQQREQPLNVTVCRCGKDGVCLPGAAALLAGGTGLSLGALVIVLASALLLLVLVLLVALRARF
WKQSRGKGLLHGPQDDLRDNVLNYDEQGGGEEDQDAYDISQLRHPTALSLPLGPPPLRRDAPQGRLHPQP
PRVLPTSPLDIADFINDGLEAADSDPSVPPYDTALIYDYEGDGSVAGTLSSILSSQGDEDQDYDYLRDWG
PRFARLADMYGHPCGLEYGARWDHQAREGLSPGALLPRHRGRTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH