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Report for CCDS10989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10989.1 Public Homo sapiens 16 DEF8 24 110 108 CCDS HistoryNCBI Gene:54849Re-query CCDS DB by CCDS ID:10989.1Re-query CCDS DB by GeneID:54849See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10989.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268676.11 ENSP00000268676.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000268676.11Link to Ensembl Protein Viewer:ENSP00000268676.7Re-query CCDS DB by Nucleotide ID:ENST00000268676Re-query CCDS DB by Protein ID:ENSP00000268676
Original member Current member NCBI NM_207514.3 NP_997397.1 Accepted alive Link to Nucleotide Sequence:NM_207514.3Link to Protein Sequence:NP_997397.1Re-query CCDS DB by Nucleotide ID:NM_207514Re-query CCDS DB by Protein ID:NP_997397Link to BLAST:NP_997397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997397.1 512 Q6ZN54-1 512 100% 0 0

Chromosomal Locations for CCDS 10989.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89949466 89949638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89954243 89954376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89955169 89955266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89957511 89957660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89959014 89959155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89960931 89961095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89961737 89961864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89962012 89962125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89963363 89963443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89964170 89964310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89964466 89964575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89965861 89965963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGCCATCCTGTCCCTGCGAGCCCCTGGGCCCTGGCAGGCGATGCAGGTATGGGCAGACAGGACGCTGT
TGACTCCGCACACCGGGGTGACTTCTCAGGTTCTCGGGGTGGCAGCTGCAGTGATGACACCGCTTCCTGG
TGGTCACGCCGCGGGCAGGACGCGGGAGGCCAGGTGGGATGCTATGGAATATGATGAGAAGCTGGCCCGT
TTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGTCTGGGCCGAGACAGCATGAGCAGGGCCCTGGGG
AGGAGGTCCCGGACGTCACTCCTGAAGAGGCCCTGCCTGAGCTGCCCCCTGGGGAGCCGGAATTCCGCTG
CCCTGAACGCGTGATGGATCTCGGCCTGTCTGAGGACCACTTCTCCCGCCCTGTGGGTCTGTTCCTGGCC
TCTGACGTCCAGCAGCTGCGGCAGGCGATCGAGGAGTGCAAGCAGGTGATTCTGGAGCTGCCCGAGCAGT
CGGAGAAGCAGAAGGATGCCGTGGTGCGACTCATCCACCTCCGGCTGAAGCTCCAGGAGCTGAAGGACCC
CAATGAGGATGAGCCAAACATCCGAGTGCTCCTTGAGCACCGCTTTTACAAGGAGAAGAGCAAGAGCGTC
AAGCAGACCTGTGACAAGTGTAACACCATCATCTGGGGGCTCATTCAGACCTGGTACACCTGCACAGGGT
GTTATTACCGCTGTCACAGTAAGTGCTTGAACCTCATCTCCAAGCCCTGTGTGAGCTCCAAAGTCAGCCA
CCAAGCTGAATACGAACTGAACATCTGCCCTGAGACAGGGCTGGACAGCCAGGATTACCGCTGTGCCGAG
TGCCGGGCGCCCATCTCTCTGCGGGGTGTGCCCAGTGAGGCCAGGCAGTGCGACTACACCGGCCAGTACT
ACTGCAGCCACTGCCACTGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAACTGGGACTTTGA
GCCTCGAAAGGTTTCTCGCTGCAGCATGCGCTACCTGGCGCTGATGGTGTCTCGGCCCGTACTCAGGCTC
CGGGAGATCAACCCTCTGCTGTTCAGCTACGTGGAGGAGCTGGTGGAGATTCGCAAGCTGCGCCAGGACA
TCCTGCTCATGAAGCCGTACTTCATCACCTGCAGGGAGGCCATGGAGGCTCGTCTGCTGCTGCAGCTCCA
GGATCGGCAGCATTTTGTGGAGAACGACGAGATGTACTCTGTCCAGGACCTCCTGGACGTGCATGCCGGC
CGCCTGGGCTGCTCGCTCACCGAGATCCACACGCTCTTCGCCAAGCACATCAAGCTGGACTGCGAGCGGT
GCCAGGCCAAGGGCTTCGTGTGTGAGCTCTGCAGAGAGGGCGACGTGCTGTTCCCGTTCGACAGCCACAC
GTCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGGACTGCTACTACGACAACTCCACCACTTGTCCC
AAGTGTGCCCGGCTCAGCCTGAGGAAGCAGTCGCTCTTCCAGGAGCCAGGTCCCGATGTGGAGGCCTAG

Translation (512 aa):
MAILSLRAPGPWQAMQVWADRTLLTPHTGVTSQVLGVAAAVMTPLPGGHAAGRTREARWDAMEYDEKLAR
FRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERVMDLGLSEDHFSRPVGLFLA
SDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKLQELKDPNEDEPNIRVLLEHRFYKEKSKSV
KQTCDKCNTIIWGLIQTWYTCTGCYYRCHSKCLNLISKPCVSSKVSHQAEYELNICPETGLDSQDYRCAE
CRAPISLRGVPSEARQCDYTGQYYCSHCHWNDLAVIPARVVHNWDFEPRKVSRCSMRYLALMVSRPVLRL
REINPLLFSYVEELVEIRKLRQDILLMKPYFITCREAMEARLLLQLQDRQHFVENDEMYSVQDLLDVHAG
RLGCSLTEIHTLFAKHIKLDCERCQAKGFVCELCREGDVLFPFDSHTSVCADCSAVFHRDCYYDNSTTCP
KCARLSLRKQSLFQEPGPDVEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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