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Report for CCDS11025.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11025.2 Public Homo sapiens 17 OR3A3 24 110 108 CCDS HistoryNCBI Gene:8392Re-query CCDS DB by CCDS ID:11025.2Re-query CCDS DB by GeneID:8392See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 11025.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641141.1 ENSP00000493061.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641141.1Link to Ensembl Protein Viewer:ENSP00000493061.1Re-query CCDS DB by Nucleotide ID:ENST00000641141Re-query CCDS DB by Protein ID:ENSP00000493061
Original member Current member EBI ENST00000574571.4 ENSP00000493211.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574571.4Link to Ensembl Protein Viewer:ENSP00000493211.1Re-query CCDS DB by Nucleotide ID:ENST00000574571Re-query CCDS DB by Protein ID:ENSP00000493211
Original member Current member NCBI NM_001386098.1 NP_001373027.1 Accepted alive Link to Nucleotide Sequence:NM_001386098.1Link to Protein Sequence:NP_001373027.1Re-query CCDS DB by Nucleotide ID:NM_001386098Re-query CCDS DB by Protein ID:NP_001373027Link to BLAST:NP_001373027.1
Original member Current member NCBI NM_012373.3 NP_036505.3 Accepted alive Link to Nucleotide Sequence:NM_012373.3Link to Protein Sequence:NP_036505.3Re-query CCDS DB by Nucleotide ID:NM_012373Re-query CCDS DB by Protein ID:NP_036505Link to BLAST:NP_036505.3

Chromosomal Locations for CCDS 11025.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3420586 3421533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGAGCCAGAAGCTGGGACCAATAGGACCGCTGTTGCTGAGTTCATTCTACTGGGCCTAGTGCAAACAG
AAGAGATGCAGCCAGTTGTCTTTGTGCTCCTCCTCTTTGCCTATCTGGTCACAACTGGGGGCAACCTCAG
CATCCTGGCAGCCGTCTTGGTGGAGCCCAAACTCCACGCCCCCATGTACTTCTTCCTGGGGAACCTGTCA
GTGCTGGATGTCGGATGTATCACTGTCACTGTTCCTGCAATGTTGGGTCGTCTCTTGTCCCACAAGTCCA
CAATTTCCTATGACGCCTGCCTCTCCCAGCTCTTCTTCTTCCACCTTCTGGCTGGGATGGACTGCTTCCT
GCTGACCGCCATGGCCTATGACCGACTCCTGGCCATCTGCCAGCCCCTCACCTACAGCACCCGCATGAGT
CAGACAGTCCAGAGGATGTTGGTGGCTGCGTCCTGGGCTTGTGCCTTCACCAACGCACTGACCCACACTG
TGGCCATGTCCACGCTCAACTTCTGTGGCCCCAATGAGGTCAATCACTTCTACTGTGACCTCCCACAGCT
CTTCCAGCTCTCCTGCTCCAGCACCCAACTCAATGAGCTGCTGCTCTTTGTAGCAGCAGCCTTCATGGCT
GTGGCACCCTTGGTCTTCATCAGTGTGTCCTATGCCCATGTGGTAGCTGCTGTGCTGCAAATCCGCTCTG
CTGAGGGCAGAAAGAAGGCCTTCTCCACATGTGGCTCCCACCTCACTGTGGTGGGCATCTTCTATGGGAC
AGGTGTCTTCAGCTACATGAGGCTGGGTTCAGTGGAATCTTCAGACAAGGATAAGGGGGTTGGGGTTTTC
ATGACTGTGATCAACCCCATGCTGAACCCACTTATCTACAGCCTCAGAAATACTGATGTTCAGGGCGCTC
TGTGTCAGCTACTTGTGGGGAAGCGATCACTGACCTGA

Translation (315 aa):
MEPEAGTNRTAVAEFILLGLVQTEEMQPVVFVLLLFAYLVTTGGNLSILAAVLVEPKLHAPMYFFLGNLS
VLDVGCITVTVPAMLGRLLSHKSTISYDACLSQLFFFHLLAGMDCFLLTAMAYDRLLAICQPLTYSTRMS
QTVQRMLVAASWACAFTNALTHTVAMSTLNFCGPNEVNHFYCDLPQLFQLSCSSTQLNELLLFVAAAFMA
VAPLVFISVSYAHVVAAVLQIRSAEGRKKAFSTCGSHLTVVGIFYGTGVFSYMRLGSVESSDKDKGVGVF
MTVINPMLNPLIYSLRNTDVQGALCQLLVGKRSLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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