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Report for CCDS11048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11048.1 Public Homo sapiens 17 SMTNL2 24 110 108 CCDS HistoryNCBI Gene:342527Re-query CCDS DB by CCDS ID:11048.1Re-query CCDS DB by GeneID:342527See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11048.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338859.8 ENSP00000345143.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338859.8Link to Ensembl Protein Viewer:ENSP00000345143.4Re-query CCDS DB by Nucleotide ID:ENST00000338859Re-query CCDS DB by Protein ID:ENSP00000345143
Original member Current member NCBI NM_198501.3 NP_940903.2 Accepted alive Link to Nucleotide Sequence:NM_198501.3Link to Protein Sequence:NP_940903.2Re-query CCDS DB by Nucleotide ID:NM_198501Re-query CCDS DB by Protein ID:NP_940903Link to BLAST:NP_940903.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940903.2 317 Q2TAL5-2 317 100% 0 0

Chromosomal Locations for CCDS 11048.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4592394 4592448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4592929 4593171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4593822 4593897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4595145 4595327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4596860 4596977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4597172 4597323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4607361 4607487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAGAAAGACCTCAAACTCCTGCATCATGGAAAATGGGCACCAGCCGGGGGCAGGTCCAGGCGATGGAC
CCCCTGAGATTGCCCAAAACTTCTCAGCACCAGATCCCCCCAGGCCTCGTCCTGTGAGCCTCTCCTTGCG
GCTGCCCCACCAGCCAGTCACGGCCATCACCCGAGTCTCTGACAGGTTCTCTGGGGAGACCTCAGCTGCG
GCTCTATCACCCATGTCTGCTGCCACCCTGGGGGGCCTCAACCCAAGCCCCAGCGAGGTCATCACGCCCT
GGACTCCCAGTCCTAGCGAGAAGAATTCCTCTTTCACGTGGTCTGTGCCAAGCTCTGGCTATGGGGCAGT
GACAGCAAGCAAACACAGCAATAGCCCACCGCTGGTGACACCACCCCAGTCGCCCGTGTCCCCGCAGCCG
CCAGCCATAACTCAGGTCCATCGGCAGGGGGAGCGTCGCAGGGAGCTGGTGAGGTCGCAGACGCTGCCCC
GCACCTCGGAGGCGCAGGCCCGGAAAGCATTGTTTGAGAAGTGGGAGCAGGAAACGGCGGCCGGCAAGGG
GAAAGGCGAGGCCCGGGCCAGGCTGAAGCGGTCGCAGAGCTTCGGCGTGGCCAGCGCCAGCAGCATCAAG
CAGATCCTGCTCGAGTGGTGCCGCAGCAAGACGCTGGGCTACCAGCACGTGGACCTGCAGAACTTCTCCT
CCAGCTGGAGCGACGGCATGGCCTTCTGCGCCCTGGTACACTCCTTCTTCCCCGATGCCTTTGACTACAA
CTCCCTGAGCCCCACGCAGAGGCAGAAGAACTTCGAGCTGGCTTTCACCATGGCCGAGAATCTGGCCAAC
TGTGAGCGCCTCATCGAAGTGGAGGACATGATGGTGATGGGCCGCAAGCCGGACCCCATGTGTGTCTTCA
CCTACGTCCAGTCGCTGTACAACCACCTGCGTCGCTTCGAGTAA

Translation (317 aa):
MRKTSNSCIMENGHQPGAGPGDGPPEIAQNFSAPDPPRPRPVSLSLRLPHQPVTAITRVSDRFSGETSAA
ALSPMSAATLGGLNPSPSEVITPWTPSPSEKNSSFTWSVPSSGYGAVTASKHSNSPPLVTPPQSPVSPQP
PAITQVHRQGERRRELVRSQTLPRTSEAQARKALFEKWEQETAAGKGKGEARARLKRSQSFGVASASSIK
QILLEWCRSKTLGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNSLSPTQRQKNFELAFTMAENLAN
CERLIEVEDMMVMGRKPDPMCVFTYVQSLYNHLRRFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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