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Report for CCDS1108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1108.1 Public Homo sapiens 1 HCN3 24 110 108 CCDS HistoryNCBI Gene:57657Re-query CCDS DB by CCDS ID:1108.1Re-query CCDS DB by GeneID:57657See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1108.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368358.4 ENSP00000357342.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368358.4Link to Ensembl Protein Viewer:ENSP00000357342.3Re-query CCDS DB by Nucleotide ID:ENST00000368358Re-query CCDS DB by Protein ID:ENSP00000357342
Original member Current member NCBI NM_020897.3 NP_065948.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020897.3Link to Protein Sequence:NP_065948.1Re-query CCDS DB by Nucleotide ID:NM_020897Re-query CCDS DB by Protein ID:NP_065948Link to BLAST:NP_065948.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065948.1 774 Q9P1Z3 774 100% 0 0

Chromosomal Locations for CCDS 1108.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155277591 155277868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155282411 155282840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155283974 155284135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155284539 155284757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155285165 155285311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155285724 155285964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155287173 155287337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155287781 155288463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2325 nt):
ATGGAGGCAGAGCAGCGGCCGGCGGCGGGGGCCAGCGAAGGGGCGACCCCTGGACTGGAGGCGGTGCCTC
CCGTTGCTCCCCCGCCTGCGACCGCGGCCTCAGGTCCGATCCCCAAATCTGGGCCTGAGCCTAAGAGGAG
GCACCTTGGGACGCTGCTCCAGCCTACGGTCAACAAGTTCTCCCTTCGGGTGTTCGGCAGCCACAAAGCA
GTGGAAATCGAGCAGGAGCGGGTGAAGTCAGCGGGGGCCTGGATCATCCACCCCTACAGCGACTTCCGGT
TTTACTGGGACCTGATCATGCTGCTGCTGATGGTGGGGAACCTCATCGTCCTGCCTGTGGGCATCACCTT
CTTCAAGGAGGAGAACTCCCCGCCTTGGATCGTCTTCAACGTATTGTCTGATACTTTCTTCCTACTGGAT
CTGGTGCTCAACTTCCGAACGGGCATCGTGGTGGAGGAGGGTGCTGAGATCCTGCTGGCACCGCGGGCCA
TCCGCACGCGCTACCTGCGCACCTGGTTCCTGGTTGACCTCATCTCTTCTATCCCTGTGGATTACATCTT
CCTAGTGGTGGAGCTGGAGCCACGGTTGGACGCTGAGGTCTACAAAACGGCACGGGCCCTACGCATCGTT
CGCTTCACCAAGATCCTAAGCCTGCTGAGGCTGCTCCGCCTCTCCCGCCTCATCCGCTACATACACCAGT
GGGAGGAGATCTTTCACATGACCTATGACCTGGCCAGTGCTGTGGTTCGCATCTTCAACCTCATTGGGAT
GATGCTGCTGCTATGTCACTGGGATGGCTGTCTGCAGTTCCTGGTGCCCATGCTGCAGGACTTCCCTCCC
GACTGCTGGGTCTCCATCAACCACATGGTGAACCACTCGTGGGGCCGCCAGTATTCCCATGCCCTGTTCA
AGGCCATGAGCCACATGCTGTGCATTGGCTATGGGCAGCAGGCACCTGTAGGCATGCCCGACGTCTGGCT
CACCATGCTCAGCATGATCGTAGGTGCCACATGCTACGCCATGTTCATCGGCCATGCCACGGCACTCATC
CAGTCCCTGGACTCTTCCCGGCGTCAGTACCAGGAGAAGTACAAGCAGGTGGAGCAGTACATGTCCTTCC
ACAAGCTGCCAGCAGACACGCGGCAGCGCATCCACGAGTACTATGAGCACCGCTACCAGGGCAAGATGTT
CGATGAGGAAAGCATCCTGGGCGAGCTGAGCGAGCCGCTTCGCGAGGAGATCATTAACTTCACCTGTCGG
GGCCTGGTGGCCCACATGCCGCTGTTTGCCCATGCCGACCCCAGCTTCGTCACTGCAGTTCTCACCAAGC
TGCGCTTTGAGGTCTTCCAGCCGGGGGATCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACTT
CATCCAGCATGGGCTGCTCAGTGTGCTGGCCCGCGGCGCCCGGGACACACGCCTCACCGATGGATCCTAC
TTTGGGGAGATCTGCCTGCTAACTAGGGGCCGGCGCACAGCCAGTGTTCGGGCTGACACCTACTGCCGCC
TTTACTCACTCAGCGTGGACCATTTCAATGCTGTGCTTGAGGAGTTCCCCATGATGCGCCGGGCCTTTGA
GACTGTGGCCATGGATCGGCTGCTCCGCATCGGCAAGAAGAATTCCATACTGCAGCGGAAGCGCTCCGAG
CCAAGTCCAGGCAGCAGTGGTGGCATCATGGAGCAGCACTTGGTGCAACATGACAGAGACATGGCTCGGG
GTGTTCGGGGTCGGGCCCCGAGCACAGGAGCTCAGCTTAGTGGAAAGCCAGTACTGTGGGAGCCACTGGT
ACATGCGCCCCTTCAGGCAGCTGCTGTGACCTCCAATGTGGCCATTGCCCTGACTCATCAGCGGGGCCCT
CTGCCCCTCTCCCCTGACTCTCCAGCCACCCTCCTTGCTCGCTCTGCTTGGCGCTCAGCAGGCTCTCCAG
CTTCCCCGCTGGTGCCCGTCCGAGCTGGCCCATGGGCATCCACCTCCCGCCTGCCCGCCCCACCTGCCCG
AACCCTGCACGCCAGCCTATCCCGGGCAGGGCGCTCCCAGGTCTCCCTGCTGGGTCCCCCTCCAGGAGGA
GGTGGACGGCGGCTAGGACCTCGGGGCCGCCCACTCTCAGCCTCCCAACCCTCTCTGCCTCAGCGGGCAA
CAGGCGATGGCTCTCCTGGGCGTAAGGGATCAGGAAGTGAGCGGCTGCCTCCCTCAGGGCTCCTGGCCAA
ACCTCCAAGGACAGCCCAGCCCCCCAGGCCACCAGTGCCTGAGCCAGCCACACCCCGGGGTCTCCAGCTT
TCTGCCAACATGTAA

Translation (774 aa):
MEAEQRPAAGASEGATPGLEAVPPVAPPPATAASGPIPKSGPEPKRRHLGTLLQPTVNKFSLRVFGSHKA
VEIEQERVKSAGAWIIHPYSDFRFYWDLIMLLLMVGNLIVLPVGITFFKEENSPPWIVFNVLSDTFFLLD
LVLNFRTGIVVEEGAEILLAPRAIRTRYLRTWFLVDLISSIPVDYIFLVVELEPRLDAEVYKTARALRIV
RFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDGCLQFLVPMLQDFPP
DCWVSINHMVNHSWGRQYSHALFKAMSHMLCIGYGQQAPVGMPDVWLTMLSMIVGATCYAMFIGHATALI
QSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQGKMFDEESILGELSEPLREEIINFTCR
GLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARDTRLTDGSY
FGEICLLTRGRRTASVRADTYCRLYSLSVDHFNAVLEEFPMMRRAFETVAMDRLLRIGKKNSILQRKRSE
PSPGSSGGIMEQHLVQHDRDMARGVRGRAPSTGAQLSGKPVLWEPLVHAPLQAAAVTSNVAIALTHQRGP
LPLSPDSPATLLARSAWRSAGSPASPLVPVRAGPWASTSRLPAPPARTLHASLSRAGRSQVSLLGPPPGG
GGRRLGPRGRPLSASQPSLPQRATGDGSPGRKGSGSERLPPSGLLAKPPRTAQPPRPPVPEPATPRGLQL
SANM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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