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Report for CCDS11142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11142.1 Public Homo sapiens 17 RPL26 24 110 108 CCDS HistoryNCBI Gene:6154Re-query CCDS DB by CCDS ID:11142.1Re-query CCDS DB by GeneID:6154See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11142.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000583011.6 ENSP00000462322.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583011.6Link to Ensembl Protein Viewer:ENSP00000462322.1Re-query CCDS DB by Nucleotide ID:ENST00000583011Re-query CCDS DB by Protein ID:ENSP00000462322
Original member Current member EBI ENST00000582556.5 ENSP00000463470.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000582556.5Link to Ensembl Protein Viewer:ENSP00000463470.1Re-query CCDS DB by Nucleotide ID:ENST00000582556Re-query CCDS DB by Protein ID:ENSP00000463470
Original member Current member EBI ENST00000584164.6 ENSP00000463784.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000584164.6Link to Ensembl Protein Viewer:ENSP00000463784.1Re-query CCDS DB by Nucleotide ID:ENST00000584164Re-query CCDS DB by Protein ID:ENSP00000463784
Original member Current member EBI ENST00000648839.1 ENSP00000498177.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000648839.1Link to Ensembl Protein Viewer:ENSP00000498177.1Re-query CCDS DB by Nucleotide ID:ENST00000648839Re-query CCDS DB by Protein ID:ENSP00000498177
Original member Current member NCBI NM_000987.5 NP_000978.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000987.5Link to Protein Sequence:NP_000978.1Re-query CCDS DB by Nucleotide ID:NM_000987Re-query CCDS DB by Protein ID:NP_000978Link to BLAST:NP_000978.1
Original member Current member NCBI NM_001315530.2 NP_001302459.1 Accepted alive Link to Nucleotide Sequence:NM_001315530.2Link to Protein Sequence:NP_001302459.1Re-query CCDS DB by Nucleotide ID:NM_001315530Re-query CCDS DB by Protein ID:NP_001302459Link to BLAST:NP_001302459.1
Original member Current member NCBI NM_001315531.2 NP_001302460.1 Accepted alive Link to Nucleotide Sequence:NM_001315531.2Link to Protein Sequence:NP_001302460.1Re-query CCDS DB by Nucleotide ID:NM_001315531Re-query CCDS DB by Protein ID:NP_001302460Link to BLAST:NP_001302460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000978.1 145 P61254 145 100% 0 0
NP_001302459.1 145 P61254 145 100% 0 0
NP_001302460.1 145 P61254 145 100% 0 0

Chromosomal Locations for CCDS 11142.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8377564 8377692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8379796 8379936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8382143 8382310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGAAGTTTAATCCCTTTGTGACTTCCGACCGAAGCAAGAATCGCAAAAGGCATTTCAATGCACCTTCCC
ACATTCGAAGGAAGATTATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAGTACAACGTGCGATCCAT
GCCCATCCGAAAGGATGATGAAGTTCAGGTTGTACGTGGACACTATAAAGGTCAGCAAATTGGCAAAGTA
GTCCAGGTTTACAGGAAGAAATATGTTATCTACATTGAACGGGTGCAGCGGGAAAAGGCTAATGGCACAA
CTGTCCACGTAGGCATTCACCCCAGCAAGGTGGTTATCACTAGGCTAAAACTGGACAAAGACCGCAAAAA
GATCCTCGAACGGAAAGCCAAATCTCGCCAAGTAGGAAAGGAAAAGGGCAAATACAAGGAAGAAACCATT
GAGAAGATGCAGGAATAA

Translation (145 aa):
MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV
VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI
EKMQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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