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Report for CCDS1116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1116.1 Public Homo sapiens 1 YY1AP1 24 110 108 CCDS HistoryNCBI Gene:55249Re-query CCDS DB by CCDS ID:1116.1Re-query CCDS DB by GeneID:55249See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1116.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347088.9 ENSP00000316079.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347088.9Link to Ensembl Protein Viewer:ENSP00000316079.6Re-query CCDS DB by Nucleotide ID:ENST00000347088Re-query CCDS DB by Protein ID:ENSP00000316079
Original member Current member EBI ENST00000355499.9 ENSP00000347686.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355499.9Link to Ensembl Protein Viewer:ENSP00000347686.4Re-query CCDS DB by Nucleotide ID:ENST00000355499Re-query CCDS DB by Protein ID:ENSP00000347686
Original member Current member EBI ENST00000368330.6 ENSP00000357314.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368330.6Link to Ensembl Protein Viewer:ENSP00000357314.2Re-query CCDS DB by Nucleotide ID:ENST00000368330Re-query CCDS DB by Protein ID:ENSP00000357314
Original member Current member NCBI NM_001198901.2 NP_001185830.1 Accepted alive Link to Nucleotide Sequence:NM_001198901.2Link to Protein Sequence:NP_001185830.1Re-query CCDS DB by Nucleotide ID:NM_001198901Re-query CCDS DB by Protein ID:NP_001185830Link to BLAST:NP_001185830.1
Original member Current member NCBI NM_001198902.2 NP_001185831.1 Accepted alive Link to Nucleotide Sequence:NM_001198902.2Link to Protein Sequence:NP_001185831.1Re-query CCDS DB by Nucleotide ID:NM_001198902Re-query CCDS DB by Protein ID:NP_001185831Link to BLAST:NP_001185831.1
Original member Current member NCBI NM_139119.3 NP_620830.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139119.3Link to Protein Sequence:NP_620830.1Re-query CCDS DB by Nucleotide ID:NM_139119Re-query CCDS DB by Protein ID:NP_620830Link to BLAST:NP_620830.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185830.1 750 Q9H869-2 750 100% 0 0
NP_001185831.1 750 Q9H869-2 750 100% 0 0
NP_620830.1 750 Q9H869-2 750 100% 0 0

Chromosomal Locations for CCDS 1116.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155659657 155660913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155661307 155661423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155668627 155668777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155670320 155670464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155672560 155672731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155675010 155675096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155676548 155676746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155679409 155679512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155680416 155680436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2253 nt):
ATGGAAGATCTGTTTGAAACTTTCCAAGATGAGATGGGATTCTCCAACATGGAAGATGATGGCCCAGAAG
AGGAGGAGCGTGTGGCTGAGCCTCAAGCTAACTTTAACACCCCTCAAGCTCTACGGTTTGAGGAACTACT
GGCCAACCTACTAAATGAACAACATCAGATAGCGAAGGAACTATTTGAACAGCTGAAGATGAAGAAACCT
TCAGCCAAACAGCAGAAGGAGGTAGAGAAGGTTAAACCCCAGTGTAAGGAAGTTCATCAGACCCTGATTC
TGGACCCAGCACAAAGGAAGAGACTCCAGCAGCAGATGCAGCAGCATGTTCAGCTCTTGACACAAATCCA
CCTTCTTGCCACCTGCAACCCCAATCTCAATCCGGAGGCCAGTAGCACCAGGATATGTCTTAAAGAGCTG
GGAACCTTTGCTCAAAGCTCCATCGCCCTTCACCATCAGTACAACCCCAAGTTTCAGACCCTGTTCCAAC
CCTGTAACTTGATGGGAGCTATGCAGCTGATTGAAGACTTCAGCACACATGTCAGCATTGACTGCAGCCC
TCATAAAACTGTCAAGAAGACTGCCAATGAATTTCCCTGTTTGCCAAAGCAAGTGGCTTGGATCCTGGCC
ACAAGCAAGGTTTTCATGTATCCAGAGTTACTTCCAGTGTGTTCCCTGAAGGCAAAGAATCCCCAGGATA
AGATCCTCTTCACCAAGGCTGAGGACAATTTGTTAGCTTTAGGACTGAAGCATTTTGAAGGGACTGAGTT
TCTTAACCCTCTAATCAGCAAGTACCTTCTAACCTGCAAGACTGCCCGCCAACTGACAGTGAGAATCAAG
AACCTCAACATGAACAGAGCTCCTGACAACATCATTAAATTTTATAAGAAGACCAAACAGCTGCCAGTCC
TAGGAAAATGCTGTGAAGAGATCCAGCCACATCAGTGGAAGCCACCTATAGAGAGAGAAGAACACCGGCT
CCCATTCTGGTTAAAGGCCAGTCTGCCATCCATCCAGGAAGAACTGCGGCACATGGCTGATGGTGCTAGA
GAGGTAGGAAATATGACTGGAACCACTGAGATCAACTCAGATCAAGGCCTAGAAAAAGACAACTCAGAGT
TGGGGAGTGAAACTCGGTACCCACTGCTATTGCCTAAGGGTGTAGTCCTGAAACTGAAGCCAGTTGCCGA
CCGTTTCCCCAAGAAGGCTTGGAGACAGAAGCGTTCATCAGTCCTGAAACCCCTCCTTATCCAACCCAGC
CCCTCTCTCCAGCCCAGCTTCAACCCTGGGAAAACACCAGCCCAATCAACTCATTCAGAAGCCCCTCCGA
GCAAAATGGTGCTCCGGATTCCTCACCCAATACAGCCAGCCACTGTTTTACAGACAGTTCCAGGTGTCCC
TCCACTGGGGGTCAGTGGAGGTGAGAGTTTTGAGTCTCCTGCAGCACTGCCTGCTATGCCCCCTGAGGCC
AGGACAAGCTTCCCTCTGTCTGAGTCCCAGACTTTGCTCTCTTCTGCCCCTGTGCCCAAGGTAATGATGC
CCTCCCCTGCCTCTTCCATGTTTCGAAAGCCATATGTGAGACGGAGACCCTCAAAAAGAAGGGGAGCCAG
GGCCTTTCGCTGTATCAAACCTGCCCCTGTTATCCACCCTGCATCTGTTATCTTCACTGTTCCTGCTACC
ACTGTGAAGATTGTGAGCCTTGGCGGTGGCTGTAACATGATCCAGCCTGTCAATGCGGCTGTGGCCCAGA
GTCCCCAGACTATTCCCATCGCCACCCTCTTGGTTAACCCTACTTCCTTCCCCTGTCCATTGAACCAGCC
CCTTGTGGCCTCCTCTGTCTCACCCTTAATTGTTTCTGGCAATTCTGTGAATCTTCCTATACCATCCACC
CCTGAAGATAAGGCCCACATGAATGTGGACATTGCTTGTGCTGTGGCTGATGGGGAAAATGCCTTTCAGG
GCCTAGAACCCAAATTAGAGCCCCAGGAACTATCTCCTCTCTCTGCTACTGTTTTCCCCAAAGTGGAACA
TAGCCCAGGGCCTCCACCAGTCGATAAACAGTGCCAAGAAGGATTGTCAGAGAACAGTGCCTATCGCTGG
ACCGTTGTGAAAACAGAGGAGGGAAGGCAAGCTCTGGAGCCGCTCCCTCAGGGCATCCAGGAGTCTCTAA
ACAACTCTTCCCCTGGGGATTTAGAGGAAGTTGTCAAGATGGAACCTGAAGATGCTACAGAGGAAATCAG
TGGATTTCTTTGA

Translation (750 aa):
MEDLFETFQDEMGFSNMEDDGPEEEERVAEPQANFNTPQALRFEELLANLLNEQHQIAKELFEQLKMKKP
SAKQQKEVEKVKPQCKEVHQTLILDPAQRKRLQQQMQQHVQLLTQIHLLATCNPNLNPEASSTRICLKEL
GTFAQSSIALHHQYNPKFQTLFQPCNLMGAMQLIEDFSTHVSIDCSPHKTVKKTANEFPCLPKQVAWILA
TSKVFMYPELLPVCSLKAKNPQDKILFTKAEDNLLALGLKHFEGTEFLNPLISKYLLTCKTARQLTVRIK
NLNMNRAPDNIIKFYKKTKQLPVLGKCCEEIQPHQWKPPIEREEHRLPFWLKASLPSIQEELRHMADGAR
EVGNMTGTTEINSDQGLEKDNSELGSETRYPLLLPKGVVLKLKPVADRFPKKAWRQKRSSVLKPLLIQPS
PSLQPSFNPGKTPAQSTHSEAPPSKMVLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAMPPEA
RTSFPLSESQTLLSSAPVPKVMMPSPASSMFRKPYVRRRPSKRRGARAFRCIKPAPVIHPASVIFTVPAT
TVKIVSLGGGCNMIQPVNAAVAQSPQTIPIATLLVNPTSFPCPLNQPLVASSVSPLIVSGNSVNLPIPST
PEDKAHMNVDIACAVADGENAFQGLEPKLEPQELSPLSATVFPKVEHSPGPPPVDKQCQEGLSENSAYRW
TVVKTEEGRQALEPLPQGIQESLNNSSPGDLEEVVKMEPEDATEEISGFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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