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Report for CCDS11262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11262.1 Public Homo sapiens 17 RNF135 24 110 108 CCDS HistoryNCBI Gene:84282Re-query CCDS DB by CCDS ID:11262.1Re-query CCDS DB by GeneID:84282See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11262.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328381.10 ENSP00000328340.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328381.10Link to Ensembl Protein Viewer:ENSP00000328340.5Re-query CCDS DB by Nucleotide ID:ENST00000328381Re-query CCDS DB by Protein ID:ENSP00000328340
Original member Current member NCBI NM_032322.4 NP_115698.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032322.4Link to Protein Sequence:NP_115698.3Re-query CCDS DB by Nucleotide ID:NM_032322Re-query CCDS DB by Protein ID:NP_115698Link to BLAST:NP_115698.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115698.3 432 Q8IUD6-1 432 100% 0 0

Chromosomal Locations for CCDS 11262.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 30971074 30971445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30984617 30984760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30987944 30988106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30997242 30997331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30998662 30999191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGCGGGCCTGGGCCTGGGCTCCGCCGTTCCCGTGTGGCTGGCCGAGGACGACCTCGGCTGCATCATCT
GCCAGGGGCTGCTGGACTGGCCCGCCACGCTGCCCTGCGGCCACAGCTTCTGCCGCCACTGCCTGGAGGC
CCTGTGGGGCGCCCGCGACGCCCGCCGCTGGGCCTGCCCCACTTGCCGCCAGGGCGCCGCGCAGCAGCCG
CACCTGCGGAAGAACACGCTACTGCAGGACCTGGCCGACAAGTACCGCCGCGCCGCACGCGAGATACAGG
CGGGCTCCGACCCTGCCCACTGCCCCTGCCCGGGCTCCAGTTCCCTCTCCAGCGCGGCCGCGAGGCCCCG
GCGCCGCCCGGAACTGCAGCGGGTGGCAGTAGAGAAGAGCATCACAGAAGTTGCTCAGGAGCTGACAGAG
CTGGTGGAACATCTTGTAGACATTGTCAGAAGCCTGCAGAATCAGAGGCCCCTATCAGAATCTGGACCAG
ACAACGAACTGAGCATCCTGGGCAAGGCTTTTTCTTCTGGGGTGGATCTTTCCATGGCTTCTCCAAAGCT
GGTGACTTCCGACACAGCTGCAGGGAAAATCAGAGATATTCTCCATGACCTAGAAGAAATTCAGGAAAAA
TTACAAGAAAGCGTCACCTGGAAAGAGGCTCCTGAAGCACAAATGCAGGGAGAACTCCTGGAAGCCCCGT
CTTCCTCCTCATGCCCATTGCCTGACCAGAGCCACCCTGCACTCAGGAGAGCTTCTCGGTTTGCTCAGTG
GGCCATCCATCCAACCTTTAACTTGAAGAGCCTTTCCTGCAGCCTGGAGGTGTCCAAGGATTCCCGTACA
GTGACTGTGTCTCACCGCCCACAACCCTATCGCTGGAGCTGTGAGAGGTTTTCTACCAGCCAGGTCTTAT
GTTCCCAGGCCCTGTCTTCTGGAAAGCATTACTGGGAAGTGGACACTAGGAATTGCAGCCACTGGGCAGT
TGGGGTGGCTTCCTGGGAGATGAGCCGCGACCAGGTCCTGGGAAGGACTATGGACTCTTGTTGTGTGGAA
TGGAAGGGGACTAGCCAGCTCTCTGCATGGCACATGGTCAAGGAAACTGTCCTTGGCTCAGACAGACCTG
GGGTGGTGGGCATCTGGCTGAACCTTGAGGAGGGAAAGCTTGCCTTCTATTCAGTGGACAATCAGGAGAA
GCTTCTGTATGAGTGTACCATCTCTGCCTCCTCTCCTTTGTACCCTGCCTTCTGGCTGTATGGCTTACAT
CCTGGAAATTACCTGATAATAAAGCAAGTAAAGGTGTAA

Translation (432 aa):
MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQP
HLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRPELQRVAVEKSITEVAQELTE
LVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDLSMASPKLVTSDTAAGKIRDILHDLEEIQEK
LQESVTWKEAPEAQMQGELLEAPSSSSCPLPDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRT
VTVSHRPQPYRWSCERFSTSQVLCSQALSSGKHYWEVDTRNCSHWAVGVASWEMSRDQVLGRTMDSCCVE
WKGTSQLSAWHMVKETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAFWLYGLH
PGNYLIIKQVKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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