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Report for CCDS1127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1127.1 Public Homo sapiens 1 UBQLN4 24 110 108 CCDS HistoryNCBI Gene:56893Re-query CCDS DB by CCDS ID:1127.1Re-query CCDS DB by GeneID:56893See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1127.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368309.4 ENSP00000357292.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368309.4Link to Ensembl Protein Viewer:ENSP00000357292.3Re-query CCDS DB by Nucleotide ID:ENST00000368309Re-query CCDS DB by Protein ID:ENSP00000357292
Original member Current member NCBI NM_020131.5 NP_064516.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020131.5Link to Protein Sequence:NP_064516.2Re-query CCDS DB by Nucleotide ID:NM_020131Re-query CCDS DB by Protein ID:NP_064516Link to BLAST:NP_064516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064516.2 601 Q9NRR5-1 601 100% 0 0

Chromosomal Locations for CCDS 1127.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156036978 156037130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156041485 156041671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156041872 156041987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156042153 156042236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156042774 156042913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156043998 156044223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156048501 156048659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156050291 156050553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156051110 156051327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156051706 156051857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156053594 156053701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGGCGGAGCCGAGCGGGGCCGAGACGAGGCCCCCCATTCGGGTCACCGTCAAGACCCCCAAGGACAAGG
AGGAAATTGTGATCTGCGATCGAGCCTCGGTCAAGGAGTTCAAAGAGGAAATCTCCCGGAGGTTTAAGGC
TCAGCAGGATCAGCTGGTCCTGATCTTCGCAGGCAAGATCCTCAAGGATGGGGACACACTGAACCAGCAC
GGAATCAAGGACGGGCTCACTGTCCATCTGGTCATCAAGACCCCTCAGAAGGCTCAAGATCCAGCTGCTG
CCACTGCTTCTTCCCCCTCCACACCTGACCCTGCCTCAGCACCCTCCACCACGCCTGCTTCACCCGCCAC
CCCTGCCCAGCCCTCCACCTCTGGCAGTGCCTCTTCAGATGCTGGCAGTGGAAGCCGGAGGAGCAGTGGT
GGGGGGCCCTCTCCGGGGGCTGGGGAGGGATCCCCCAGTGCTACTGCGTCCATACTCTCTGGCTTTGGGG
GCATCCTGGGGCTGGGCAGCCTAGGCCTGGGCTCTGCCAACTTCATGGAGCTGCAGCAGCAGATGCAGCG
GCAGCTGATGTCCAATCCTGAGATGCTGTCACAGATCATGGAGAACCCCCTGGTCCAGGATATGATGTCT
AACCCTGATCTGATGCGTCACATGATTATGGCCAACCCCCAGATGCAGCAGTTGATGGAGCGGAACCCTG
AGATCAGCCACATGCTCAATAACCCTGAACTCATGAGGCAGACAATGGAGCTTGCTCGGAATCCAGCCAT
GATGCAAGAGATGATGCGGAACCAGGACCGGGCCCTGAGCAACCTTGAGAGCATCCCTGGAGGGTATAAT
GCCCTCCGCCGCATGTACACGGACATCCAGGAGCCCATGTTCAGTGCTGCCCGGGAACAGTTTGGCAACA
ATCCCTTCTCTTCCCTGGCCGGGAACTCCGACAGCTCATCCTCCCAGCCTCTGCGGACTGAGAATCGAGA
GCCCCTCCCTAACCCCTGGAGCCCCTCGCCCCCCACCTCCCAGGCCCCCGGGTCCGGTGGGGAGGGCACC
GGAGGATCGGGGACCAGCCAGGTGCACCCGACAGTCTCGAACCCCTTTGGGATCAATGCGGCTAGCCTGG
GGTCAGGGATGTTCAATAGCCCAGAAATGCAAGCCCTCCTCCAGCAGATCTCTGAGAACCCCCAGCTGAT
GCAGAATGTGATCTCAGCACCCTACATGCGCAGCATGATGCAGACGCTTGCCCAGAACCCCGACTTTGCT
GCTCAGATGATGGTGAATGTGCCGCTCTTCGCGGGGAACCCCCAACTGCAGGAGCAGCTCCGCCTGCAGC
TCCCAGTCTTCCTGCAGCAGATGCAGAACCCAGAGTCACTCTCCATCCTTACCAATCCCCGAGCCATGCA
GGCATTGCTGCAGATCCAGCAGGGACTACAGACCTTGCAGACCGAGGCCCCTGGGCTGGTACCCAGCCTT
GGCTCCTTTGGGATATCCCGGACCCCAGCACCCTCAGCAGGCAGCAACGCAGGGTCTACGCCCGAGGCCC
CCACTTCCTCACCAGCCACGCCAGCCACATCTTCTCCAACAGGGGCTTCCAGCGCCCAGCAGCAACTCAT
GCAGCAGATGATCCAGCTTTTGGCTGGAAGTGGAAACTCACAGGTGCAGACGCCAGAAGTGAGATTTCAG
CAGCAGCTGGAGCAGCTCAACTCCATGGGCTTCATCAATCGTGAGGCTAACCTGCAGGCCCTGATTGCCA
CAGGAGGGGACATCAACGCAGCTATCGAGAGACTGCTGGGCTCCCAGCTCTCCTAA

Translation (601 aa):
MAEPSGAETRPPIRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQH
GIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSG
GGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMS
NPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYN
ALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGT
GGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFA
AQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSL
GSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTPEVRFQ
QQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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