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Report for CCDS11300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11300.1 Public Homo sapiens 17 CCL5 24 110 108 CCDS HistoryNCBI Gene:6352Re-query CCDS DB by CCDS ID:11300.1Re-query CCDS DB by GeneID:6352See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000605509.2 ENSP00000474141.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000605509.2Link to Ensembl Protein Viewer:ENSP00000474141.2Re-query CCDS DB by Nucleotide ID:ENST00000605509Re-query CCDS DB by Protein ID:ENSP00000474141
Original member Current member EBI ENST00000603197.6 ENSP00000474412.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000603197.6Link to Ensembl Protein Viewer:ENSP00000474412.1Re-query CCDS DB by Nucleotide ID:ENST00000603197Re-query CCDS DB by Protein ID:ENSP00000474412
Original member Current member EBI ENST00000605140.6 ENSP00000475057.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000605140.6Link to Ensembl Protein Viewer:ENSP00000475057.1Re-query CCDS DB by Nucleotide ID:ENST00000605140Re-query CCDS DB by Protein ID:ENSP00000475057
Original member Current member NCBI NM_002985.3 NP_002976.2 Accepted alive Link to Nucleotide Sequence:NM_002985.3Link to Protein Sequence:NP_002976.2Re-query CCDS DB by Nucleotide ID:NM_002985Re-query CCDS DB by Protein ID:NP_002976Link to BLAST:NP_002976.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002976.2 91 P13501 91 100% 0 0

Chromosomal Locations for CCDS 11300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35872377 35872464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35878528 35878639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35880230 35880305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGAAGGTCTCCGCGGCAGCCCTCGCTGTCATCCTCATTGCTACTGCCCTCTGCGCTCCTGCATCTGCCT
CCCCATATTCCTCGGACACCACACCCTGCTGCTTTGCCTACATTGCCCGCCCACTGCCCCGTGCCCACAT
CAAGGAGTATTTCTACACCAGTGGCAAGTGCTCCAACCCAGCAGTCGTCTTTGTCACCCGAAAGAACCGC
CAAGTGTGTGCCAACCCAGAGAAGAAATGGGTTCGGGAGTACATCAACTCTTTGGAGATGAGCTAG

Translation (91 aa):
MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNR
QVCANPEKKWVREYINSLEMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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