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Report for CCDS11323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11323.1 Public Homo sapiens 17 DDX52 24 110 108 CCDS HistoryNCBI Gene:11056Re-query CCDS DB by CCDS ID:11323.1Re-query CCDS DB by GeneID:11056See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11323.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617633.5 ENSP00000479504.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617633.5Link to Ensembl Protein Viewer:ENSP00000479504.1Re-query CCDS DB by Nucleotide ID:ENST00000617633Re-query CCDS DB by Protein ID:ENSP00000479504
Original member Current member NCBI NM_007010.5 NP_008941.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007010.5Link to Protein Sequence:NP_008941.3Re-query CCDS DB by Nucleotide ID:NM_007010Re-query CCDS DB by Protein ID:NP_008941Link to BLAST:NP_008941.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008941.3 599 Q9Y2R4 599 100% 0 0

Chromosomal Locations for CCDS 11323.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37614296 37614353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37618292 37618384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37619768 37619839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37620873 37620948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37621127 37621277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37621398 37621520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37624344 37624434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37625895 37626098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37626788 37626860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37628561 37628672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37630030 37630173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37632113 37632298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37633288 37633418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37642110 37642308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37643334 37643420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGGACGTCCACGATCTCTTTCGCCGGCTCGGCGCGGGGGCCAAATTCGACACGAGACGCTTCTCGGCAG
ACGCAGCTCGATTCCAGATAGGAAAAAGGAAATATGACTTTGATTCTTCGGAGGTGCTTCAGGGACTGGA
CTTTTTTGGAAACAAGAAGTCTGTCCCAGGTGTGTGTGGAGCATCACAAACACATCAGAAGCCCCAAAAT
GGAGAGAAAAAAGAAGAGAGCCTAACTGAAAGGAAGAGGGAGCAGAGCAAGAAAAAAAGGAAGACGATGA
CTTCAGAAATTGCTTCCCAAGAAGAAGGTGCTACTATACAGTGGATGTCATCTGTAGAAGCAAAGATTGA
AGACAAAAAAGTTCAGAGAGAAAGTAAACTAACTTCCGGAAAGTTGGAGAATCTCAGAAAAGAAAAGATA
AACTTCTTGCGGAATAAACACAAAATTCACGTCCAAGGAACCGATCTTCCTGACCCAATTGCTACATTTC
AGCAACTTGACCAGGAATATAAAATCAATTCTCGACTACTTCAGAACATTCTAGATGCAGGTTTCCAAAT
GCCTACGCCAATCCAAATGCAAGCCATCCCAGTTATGCTGCATGGTCGGGAACTTCTGGCTTCTGCTCCA
ACTGGATCTGGAAAAACATTAGCTTTTAGCATTCCTATTTTAATGCAGCTGAAACAACCCGCAAATAAAG
GCTTCAGAGCCCTGATTATATCACCAACACGAGAACTTGCCAGCCAGATTCACAGAGAGTTAATAAAAAT
TTCTGAGGGAACAGGATTCAGAATACACATGATCCACAAAGCAGCAGTGGCAGCCAAGAAATTTGGACCT
AAATCATCTAAAAAGTTTGATATTCTTGTGACTACTCCAAATCGACTAATCTATTTATTAAAGCAAGATC
CCCCCGGAATCGACCTAGCAAGTGTTGAGTGGCTTGTAGTAGACGAATCAGATAAACTGTTTGAAGATGG
CAAAACTGGGTTCAGAGACCAGCTGGCTTCCATTTTCCTGGCCTGCACATCCCACAAGGTCCGAAGAGCT
ATGTTCAGTGCAACTTTTGCATATGATGTTGAACAGTGGTGCAAACTCAACCTGGACAATGTCATCAGTG
TGTCCATTGGAGCAAGGAATTCTGCAGTAGAAACTGTAGAACAAGAGCTTCTCTTTGTTGGATCTGAGAC
CGGAAAACTTCTGGCCGTGAGAGAACTTGTTAAAAAGGGTTTCAATCCACCTGTTCTTGTTTTTGTTCAG
TCCATTGAAAGGGCTAAAGAACTTTTTCATGAGCTCATATATGAAGGTATTAATGTGGATGTTATTCATG
CAGAGAGAACACAACAACAGAGAGATAACACAGTCCACAGTTTCAGAGCAGGAAAAATCTGGGTTCTGAT
TTGTACAGCCTTGCTAGCAAGAGGGATTGATTTTAAAGGTGTGAACTTGGTGATCAACTATGACTTTCCA
ACTAGCTCAGTGGAATATATCCACAGGATAGGTCGAACTGGAAGAGCAGGGAATAAGGGAAAAGCAATTA
CATTTTTCACTGAGGATGATAAGCCATTATTAAGAAGCGTTGCTAATGTTATACAGCAGGCTGGGTGTCC
TGTACCAGAATACATAAAAGGTTTTCAGAAACTACTAAGCAAACAAAAGAAAAAGATGATTAAGAAACCA
TTGGAAAGGGAGAGCATTAGTACAACTCCAAAATGTTTCTTAGAAAAAGCTAAGGATAAACAGAAAAAGG
TCACTGGTCAGAACAGCAAGAAGAAAGTAGCTCTTGAAGACAAAAGTTAA

Translation (599 aa):
MDVHDLFRRLGAGAKFDTRRFSADAARFQIGKRKYDFDSSEVLQGLDFFGNKKSVPGVCGASQTHQKPQN
GEKKEESLTERKREQSKKKRKTMTSEIASQEEGATIQWMSSVEAKIEDKKVQRESKLTSGKLENLRKEKI
NFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAP
TGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGP
KSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRA
MFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAVRELVKKGFNPPVLVFVQ
SIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFP
TSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKP
LERESISTTPKCFLEKAKDKQKKVTGQNSKKKVALEDKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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