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Report for CCDS11368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11368.1 Public Homo sapiens 17 TNS4 24 110 108 CCDS HistoryNCBI Gene:84951Re-query CCDS DB by CCDS ID:11368.1Re-query CCDS DB by GeneID:84951See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11368.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254051.11 ENSP00000254051.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254051.11Link to Ensembl Protein Viewer:ENSP00000254051.6Re-query CCDS DB by Nucleotide ID:ENST00000254051Re-query CCDS DB by Protein ID:ENSP00000254051
Original member Current member NCBI NM_032865.6 NP_116254.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032865.6Link to Protein Sequence:NP_116254.4Re-query CCDS DB by Nucleotide ID:NM_032865Re-query CCDS DB by Protein ID:NP_116254Link to BLAST:NP_116254.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116254.4 715 Q8IZW8 715 100% 0 0

Chromosomal Locations for CCDS 11368.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40477588 40477729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40478307 40478333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40478580 40478648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40479674 40479842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40480700 40480768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40482129 40482206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40482324 40482416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40484484 40484609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40484921 40485007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40487036 40487460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40488546 40488969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40495987 40496425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGTCCCAGGTGATGTCCAGCCCACTGCTGGCAGGAGGCCATGCTGTCAGCTTGGCGCCTTGTGATGAGC
CCAGGAGGACCCTGCACCCAGCACCCAGCCCCAGCCTGCCACCCCAGTGTTCTTACTACACCACGGAAGG
CTGGGGAGCCCAGGCCCTGATGGCCCCCGTGCCCTGCATGGGGCCCCCTGGCCGACTCCAGCAAGCCCCA
CAGGTGGAGGCCAAAGCCACCTGCTTCCTGCCGTCCCCTGGTGAGAAGGCCTTGGGGACCCCAGAGGACC
TTGACTCCTACATTGACTTCTCACTGGAGAGCCTCAATCAGATGATCCTGGAACTGGACCCCACCTTCCA
GCTGCTTCCCCCAGGGACTGGGGGCTCCCAGGCTGAGCTGGCCCAGAGCACCATGTCAATGAGAAAGAAG
GAGGAATCTGAAGCCTTGGACATAAAGTACATCGAGGTGACCTCCGCCAGATCAAGGTGCCACGATGGCC
CCCAGCACTGCTCCAGCCCCTCTGTCACCCCGCCCTTCGGCTCCCTTCGCAGTGGTGGCCTCCTCCTTTC
CAGAGACGTCCCCCGAGAGACACGAAGCAGCAGTGAGAGCCTCATCTTCTCTGGGAACCAGGGCAGGGGG
CACCAGCGCCCTCTGCCCCCCTCAGAGGGTCTCTCCCCTCGACCCCCAAATTCCCCCAGCATCTCAATCC
CTTGCATGGGGAGCAAGGCCTCGAGCCCCCATGGTTTGGGCTCCCCGCTGGTGGCTTCTCCAAGACTGGA
GAAGCGGCTGGGAGGCCTGGCCCCACAGCGGGGCAGCAGGATCTCTGTGCTGTCAGCCAGCCCAGTGTCT
GATGTCAGCTATATGTTTGGAAGCAGCCAGTCCCTCCTGCACTCCAGCAACTCCAGCCATCAGTCATCTT
CCAGATCCTTGGAAAGTCCAGCCAACTCTTCCTCCAGCCTCCACAGCCTTGGCTCAGTGTCCCTGTGTAC
AAGACCCAGTGACTTCCAGGCTCCCAGAAACCCCACCCTAACCATGGGCCAACCCAGAACACCCCACTCT
CCACCACTGGCCAAAGAACATGCCAGCAGCTGCCCCCCATCCATCACCAACTCCATGGTGGACATACCCA
TTGTGCTGATCAACGGCTGCCCAGAACCAGGGTCTTCTCCACCCCAGCGGACCCCAGGACACCAGAACTC
CGTTCAACCTGGAGCTGCTTCTCCCAGCAACCCCTGTCCAGCCACCAGGAGCAACAGCCAGACCCTGTCA
GATGCCCCCTTTACCACATGCCCAGAGGGTCCCGCCAGGGACATGCAGCCCACCATGAAGTTCGTGATGG
ACACATCTAAATACTGGTTTAAGCCAAACATCACCCGAGAGCAAGCAATCGAGCTGCTGAGGAAGGAGGA
GCCAGGGGCTTTTGTCATAAGGGACAGCTCTTCATACCGAGGCTCCTTCGGCCTGGCCCTGAAGGTGCAG
GAGGTTCCCGCGTCTGCTCAGAGTCGACCAGGTGAGGACAGCAATGACCTCATCCGACACTTCCTCATCG
AGTCGTCTGCCAAAGGAGTGCATCTCAAAGGAGCAGATGAGGAGCCCTACTTTGGGAGCCTCTCTGCCTT
CGTGTGCCAGCATTCCATCATGGCCCTGGCCCTGCCCTGCAAACTCACCATCCCACAGAGAGAACTGGGA
GGTGCAGATGGGGCCTCGGACTCTACAGACAGCCCAGCCTCCTGCCAGAAGAAATCTGCGGGCTGCCACA
CCCTGTACCTGAGCTCAGTGAGCGTGGAGACCCTGACTGGAGCCCTGGCCGTGCAGAAAGCCATCTCCAC
CACCTTTGAGAGGGACATCCTCCCCACGCCCACCGTGGTCCACTTCAAAGTCACAGAGCAGGGCATCACT
CTGACTGATGTCCAGAGGAAGGTGTTTTTCCGGCGCCATTACCCACTCACCACCCTCCGCTTCTGTGGTA
TGGACCCTGAGCAACGGAAGTGGCAGAAGTACTGCAAACCCTCCTGGATCTTTGGGTTTGTGGCCAAGAG
CCAGACAGAGCCTCAGGAGAACGTATGCCACCTCTTTGCGGAGTATGACATGGTCCAGCCAGCCTCGCAG
GTCATCGGCCTGGTGACTGCTCTGCTGCAGGACGCAGAAAGGATGTAG

Translation (715 aa):
MSQVMSSPLLAGGHAVSLAPCDEPRRTLHPAPSPSLPPQCSYYTTEGWGAQALMAPVPCMGPPGRLQQAP
QVEAKATCFLPSPGEKALGTPEDLDSYIDFSLESLNQMILELDPTFQLLPPGTGGSQAELAQSTMSMRKK
EESEALDIKYIEVTSARSRCHDGPQHCSSPSVTPPFGSLRSGGLLLSRDVPRETRSSSESLIFSGNQGRG
HQRPLPPSEGLSPRPPNSPSISIPCMGSKASSPHGLGSPLVASPRLEKRLGGLAPQRGSRISVLSASPVS
DVSYMFGSSQSLLHSSNSSHQSSSRSLESPANSSSSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTPHS
PPLAKEHASSCPPSITNSMVDIPIVLINGCPEPGSSPPQRTPGHQNSVQPGAASPSNPCPATRSNSQTLS
DAPFTTCPEGPARDMQPTMKFVMDTSKYWFKPNITREQAIELLRKEEPGAFVIRDSSSYRGSFGLALKVQ
EVPASAQSRPGEDSNDLIRHFLIESSAKGVHLKGADEEPYFGSLSAFVCQHSIMALALPCKLTIPQRELG
GADGASDSTDSPASCQKKSAGCHTLYLSSVSVETLTGALAVQKAISTTFERDILPTPTVVHFKVTEQGIT
LTDVQRKVFFRRHYPLTTLRFCGMDPEQRKWQKYCKPSWIFGFVAKSQTEPQENVCHLFAEYDMVQPASQ
VIGLVTALLQDAERM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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