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Report for CCDS1141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1141.1 Public Homo sapiens 1 TSACC 24 110 108 CCDS HistoryNCBI Gene:128229Re-query CCDS DB by CCDS ID:1141.1Re-query CCDS DB by GeneID:128229See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1141.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368251.1 ENSP00000357234.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368251.1Link to Ensembl Protein Viewer:ENSP00000357234.1Re-query CCDS DB by Nucleotide ID:ENST00000368251Re-query CCDS DB by Protein ID:ENSP00000357234
Original member Current member EBI ENST00000368252.5 ENSP00000357235.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368252.5Link to Ensembl Protein Viewer:ENSP00000357235.1Re-query CCDS DB by Nucleotide ID:ENST00000368252Re-query CCDS DB by Protein ID:ENSP00000357235
Original member Current member EBI ENST00000368253.6 ENSP00000357236.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368253.6Link to Ensembl Protein Viewer:ENSP00000357236.1Re-query CCDS DB by Nucleotide ID:ENST00000368253Re-query CCDS DB by Protein ID:ENSP00000357236
Original member Current member EBI ENST00000368254.6 ENSP00000357237.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368254.6Link to Ensembl Protein Viewer:ENSP00000357237.1Re-query CCDS DB by Nucleotide ID:ENST00000368254Re-query CCDS DB by Protein ID:ENSP00000357237
Original member Current member EBI ENST00000368255.7 ENSP00000357238.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368255.7Link to Ensembl Protein Viewer:ENSP00000357238.3Re-query CCDS DB by Nucleotide ID:ENST00000368255Re-query CCDS DB by Protein ID:ENSP00000357238
Original member Current member NCBI NM_001304817.2 NP_001291746.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304817.2Link to Protein Sequence:NP_001291746.1Re-query CCDS DB by Nucleotide ID:NM_001304817Re-query CCDS DB by Protein ID:NP_001291746Link to BLAST:NP_001291746.1
Original member Current member NCBI NM_001304818.2 NP_001291747.1 Accepted alive Link to Nucleotide Sequence:NM_001304818.2Link to Protein Sequence:NP_001291747.1Re-query CCDS DB by Nucleotide ID:NM_001304818Re-query CCDS DB by Protein ID:NP_001291747Link to BLAST:NP_001291747.1
Original member Current member NCBI NM_001304819.2 NP_001291748.1 Accepted alive Link to Nucleotide Sequence:NM_001304819.2Link to Protein Sequence:NP_001291748.1Re-query CCDS DB by Nucleotide ID:NM_001304819Re-query CCDS DB by Protein ID:NP_001291748Link to BLAST:NP_001291748.1
Original member Current member NCBI NM_001304820.1 NP_001291749.1 Accepted alive Link to Nucleotide Sequence:NM_001304820.1Link to Protein Sequence:NP_001291749.1Re-query CCDS DB by Nucleotide ID:NM_001304820Re-query CCDS DB by Protein ID:NP_001291749Link to BLAST:NP_001291749.1
Original member Current member NCBI NM_001304821.2 NP_001291750.1 Accepted alive Link to Nucleotide Sequence:NM_001304821.2Link to Protein Sequence:NP_001291750.1Re-query CCDS DB by Nucleotide ID:NM_001304821Re-query CCDS DB by Protein ID:NP_001291750Link to BLAST:NP_001291750.1
Original member Current member NCBI NM_144627.5 NP_653228.1 Accepted alive Link to Nucleotide Sequence:NM_144627.5Link to Protein Sequence:NP_653228.1Re-query CCDS DB by Nucleotide ID:NM_144627Re-query CCDS DB by Protein ID:NP_653228Link to BLAST:NP_653228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291746.1 125 Q96A04 125 100% 0 0
NP_001291747.1 125 Q96A04 125 100% 0 0
NP_001291748.1 125 Q96A04 125 100% 0 0
NP_001291749.1 125 Q96A04 125 100% 0 0
NP_001291750.1 125 Q96A04 125 100% 0 0
NP_653228.1 125 Q96A04 125 100% 0 0

Chromosomal Locations for CCDS 1141.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156339758 156339791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156344580 156344708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156346768 156346982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGGAGCGGCACACTAGTCATCCTAACAGAAAAGTTCCAGCCAAAGAGGAAGCTAATGCTGTGCCTCTCT
GTAGAGCAAAACCCTCCCCCAGCTATATTAATCTTCAAGCAAGTTCCCCACCAGCCACTTTTCTGAACAT
CCAGACAACAAAGCTGCCCTCGGTTGATCACAAGCCCAAGGAATGCCTAGGACTCCTGGAATGTATGTAT
GCAAACCTCCAGCTTCAGACCCAGCTCGCCCAACAACAGATGGCTGTTTTGGAACATTTACAGGCATCTG
TGACACAACTGGCTCCTGGGAGGGGAAGCAATAACTCTTCTCTCCCAGCCTTATCTCCTAATCCATTGTT
AAATCACCTGCCCCAATTCAGTAAATGA

Translation (125 aa):
MERHTSHPNRKVPAKEEANAVPLCRAKPSPSYINLQASSPPATFLNIQTTKLPSVDHKPKECLGLLECMY
ANLQLQTQLAQQQMAVLEHLQASVTQLAPGRGSNNSSLPALSPNPLLNHLPQFSK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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