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Report for CCDS11419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11419.1 Public Homo sapiens 17 RAB5C 24 110 108 CCDS HistoryNCBI Gene:5878Re-query CCDS DB by CCDS ID:11419.1Re-query CCDS DB by GeneID:5878See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346213.9 ENSP00000345689.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000346213.9Link to Ensembl Protein Viewer:ENSP00000345689.5Re-query CCDS DB by Nucleotide ID:ENST00000346213Re-query CCDS DB by Protein ID:ENSP00000345689
Original member Current member EBI ENST00000393860.7 ENSP00000377440.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393860.7Link to Ensembl Protein Viewer:ENSP00000377440.3Re-query CCDS DB by Nucleotide ID:ENST00000393860Re-query CCDS DB by Protein ID:ENSP00000377440
Original member Current member NCBI NM_004583.4 NP_004574.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004583.4Link to Protein Sequence:NP_004574.2Re-query CCDS DB by Nucleotide ID:NM_004583Re-query CCDS DB by Protein ID:NP_004574Link to BLAST:NP_004574.2
Original member Current member NCBI NM_201434.3 NP_958842.1 Accepted alive Link to Nucleotide Sequence:NM_201434.3Link to Protein Sequence:NP_958842.1Re-query CCDS DB by Nucleotide ID:NM_201434Re-query CCDS DB by Protein ID:NP_958842Link to BLAST:NP_958842.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004574.2 216 P51148-1 216 100% 0 0
NP_958842.1 216 P51148-1 216 100% 0 0

Chromosomal Locations for CCDS 11419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42125783 42125898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42126755 42126848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42128261 42128383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42128649 42128800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42130337 42130502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGCGGGTCGGGGAGGCGCAGCACGACCCAATGGACCAGCTGCTGGGAACAAGATCTGTCAATTTAAGC
TGGTTCTGCTGGGGGAGTCTGCGGTAGGCAAATCCAGCCTCGTCCTCCGCTTTGTCAAGGGACAGTTTCA
CGAGTACCAGGAGAGCACAATTGGAGCGGCCTTCCTCACACAGACTGTCTGCCTGGATGACACAACAGTC
AAGTTTGAGATCTGGGACACAGCTGGACAGGAGCGGTATCACAGCCTGGCCCCCATGTACTATCGGGGGG
CCCAGGCTGCCATCGTGGTCTATGACATCACCAACACAGATACATTTGCACGGGCCAAGAACTGGGTGAA
GGAGCTACAGAGGCAGGCCAGCCCCAACATCGTCATTGCACTCGCGGGTAACAAGGCAGACCTGGCCAGC
AAGAGAGCCGTGGAATTCCAGGAAGCACAAGCCTATGCAGACGACAACAGTTTGCTGTTCATGGAGACAT
CAGCAAAGACTGCAATGAACGTGAACGAAATCTTCATGGCAATAGCTAAGAAGCTTCCCAAGAACGAGCC
CCAGAATGCAACTGGTGCTCCAGGCCGAAACCGAGGTGTGGACCTCCAGGAGAACAACCCAGCCAGCCGG
AGCCAGTGCTGCAGCAACTGA

Translation (216 aa):
MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV
KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS
KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASR
SQCCSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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