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Report for CCDS11422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11422.1 Public Homo sapiens 17 GHDC 24 110 108 CCDS HistoryNCBI Gene:84514Re-query CCDS DB by CCDS ID:11422.1Re-query CCDS DB by GeneID:84514See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11422.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301671.12 ENSP00000301671.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301671.12Link to Ensembl Protein Viewer:ENSP00000301671.7Re-query CCDS DB by Nucleotide ID:ENST00000301671Re-query CCDS DB by Protein ID:ENSP00000301671
Original member Current member EBI ENST00000587427.6 ENSP00000467585.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000587427.6Link to Ensembl Protein Viewer:ENSP00000467585.1Re-query CCDS DB by Nucleotide ID:ENST00000587427Re-query CCDS DB by Protein ID:ENSP00000467585
Original member Current member NCBI NM_032484.5 NP_115873.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032484.5Link to Protein Sequence:NP_115873.1Re-query CCDS DB by Nucleotide ID:NM_032484Re-query CCDS DB by Protein ID:NP_115873Link to BLAST:NP_115873.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115873.1 530 Q8N2G8-1 530 100% 0 0

Chromosomal Locations for CCDS 11422.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42189703 42189921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42190185 42190270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42190624 42190757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42190832 42190903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42191018 42191210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42192241 42192742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42192906 42193027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42193317 42193581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGCTGCTGTGGCCACTGCTGCTGCTGCTGCTGCTGCTGCCAACATTGGCCCTGCTCAGGCAGCAGCGGT
CCCAGGATGCCAGGCTGTCCTGGCTTGCTGGCCTCCAGCACCGAGTGGCATGGGGGGCCCTGGTCTGGGC
AGCCACCTGGCAGCGGCGGAGGCTGGAGCAGAGCACGCTCCATGTGCACCAGAGCCAGCAGCAGGCCCTG
AGGTGGTGTCTACAGGGAGCCCAGCGCCCCCACTGTTCCCTCAGAAGGAGCACAGACATAAGCACCTTCC
GGAATCATCTCCCTCTGACCAAGGCCAGCCAGACCCAGCAGGAAGACAGTGGAGAGCAGCCACTGCCCCC
GACCTCAAACCAGGACCTTGGGGAGGCCTCTCTGCAGGCCACCTTGCTGGGTCTGGCAGCCCTAAACAAG
GCCTACCCAGAAGTGCTGGCTCAGGGACGCACTGCCCGTGTGACGCTTACATCCCCTTGGCCCCGACCCC
TGCCTTGGCCTGGGAATACCCTGGGCCAGGTGGGCACCCCTGGAACCAAGGACCCTAGGGCCCTGCTGCT
GGACGCACTGAGGTCCCCAGGGCTGAGGGCACTGGAGGCTGGGACGGCTGTCGAACTTCTGGATGTTTTC
TTGGGCCTGGAGACTGATGGTGAAGAGCTAGCTGGGGCGATAGCTGCCGGGAACCCTGGAGCGCCTCTCC
GTGAACGGGCAGCTGAGCTCCGGGAGGCCCTAGAGCAGGGGCCACGGGGACTGGCCCTTCGGCTCTGGCC
AAAGCTGCAGGTGGTGGTGACTCTGGATGCAGGAGGCCAGGCCGAGGCTGTGGCTGCCCTCGGGGCCTTG
TGGTGCCAAGGACTAGCCTTCTTCTCTCCTGCTTATGCTGCCTCGGGAGGGGTGCTGGGCCTAAACCTAC
AGCCAGAGCAGCCCCATGGGCTCTACCTTCTGCCCCCTGGGGCCCCCTTTATCGAGCTGCTCCCAGTCAA
GGAAGGCACCCAGGAGGAAGCTGCCTCCACCCTCCTTTTGGCCGAGGCCCAGCAGGGCAAGGAGTATGAG
CTGGTGCTGACGGACCGCGCCAGCCTCACCAGGTGCCGCCTGGGTGATGTGGTGCGAGTGGTTGGTGCCT
ACAATCAGTGTCCAGTCGTCAGGTTCATCTGCAGGCTGGACCAGACCCTGAGTGTGCGAGGGGAAGATAT
TGGTGAAGACCTGTTCTCTGAGGCCCTGGGCCGGGCAGTGGGGCAGTGGGCGGGGGCCAAGCTGCTGGAC
CATGGCTGTGTGGAGAGCAGCATTCTGGATTCCTCTGCGGGCTCTGCTCCCCACTACGAGGTGTTTGTGG
CGCTGAGGGGGCTGAGGAATCTGTCAGAGGAAAATCGAGACAAGCTGGACCACTGCCTTCAGGAAGCCTC
TCCCCGCTACAAGTCCCTGCGGTTCTGGGGCAGCGTGGGCCCTGCCAGAGTCCACCTGGTGGGGCAGGGA
GCCTTCCGAGCACTCCGGGCAGCCCTCGCTGCCTGCCCCTCCTCCCCCTTCCCCCCTGCGATGCCCCGGG
TCCTTCGGCACAGGCACCTGGCCCAGTGTCTGCAGGAGAGGGTGGTGTCCTGA

Translation (530 aa):
MLLWPLLLLLLLLPTLALLRQQRSQDARLSWLAGLQHRVAWGALVWAATWQRRRLEQSTLHVHQSQQQAL
RWCLQGAQRPHCSLRRSTDISTFRNHLPLTKASQTQQEDSGEQPLPPTSNQDLGEASLQATLLGLAALNK
AYPEVLAQGRTARVTLTSPWPRPLPWPGNTLGQVGTPGTKDPRALLLDALRSPGLRALEAGTAVELLDVF
LGLETDGEELAGAIAAGNPGAPLRERAAELREALEQGPRGLALRLWPKLQVVVTLDAGGQAEAVAALGAL
WCQGLAFFSPAYAASGGVLGLNLQPEQPHGLYLLPPGAPFIELLPVKEGTQEEAASTLLLAEAQQGKEYE
LVLTDRASLTRCRLGDVVRVVGAYNQCPVVRFICRLDQTLSVRGEDIGEDLFSEALGRAVGQWAGAKLLD
HGCVESSILDSSAGSAPHYEVFVALRGLRNLSEENRDKLDHCLQEASPRYKSLRFWGSVGPARVHLVGQG
AFRALRAALAACPSSPFPPAMPRVLRHRHLAQCLQERVVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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