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Report for CCDS11527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11527.1 Public Homo sapiens 17 HOXB2 24 110 108 CCDS HistoryNCBI Gene:3212Re-query CCDS DB by CCDS ID:11527.1Re-query CCDS DB by GeneID:3212See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11527.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330070.6 ENSP00000331741.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330070.6Link to Ensembl Protein Viewer:ENSP00000331741.4Re-query CCDS DB by Nucleotide ID:ENST00000330070Re-query CCDS DB by Protein ID:ENSP00000331741
Original member Current member NCBI NM_002145.4 NP_002136.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002145.4Link to Protein Sequence:NP_002136.1Re-query CCDS DB by Nucleotide ID:NM_002145Re-query CCDS DB by Protein ID:NP_002136Link to BLAST:NP_002136.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002136.1 356 P14652 356 100% 0 0

Chromosomal Locations for CCDS 11527.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48543068 48543747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48544521 48544911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGAATTTTGAATTTGAGAGGGAGATTGGGTTTATAAACAGCCAGCCGTCGCTCGCCGAGTGTCTGACTT
CCTTCCCCGCTGTCTTGGAGACATTTCAAACTTCATCAATCAAGGAGTCGACATTAATTCCTCCTCCTCC
TCCTTTCGAGCAAACCTTCCCCAGCCTCCAGCCCGGCGCCTCCACCCTTCAGAGACCCAGGAGCCAAAAG
CGAGCCGAAGATGGGCCTGCTCTGCCGCCGCCACCGCCGCCGCCACTCCCCGCTGCCCCCCCGGCCCCCG
AGTTCCCTTGGATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGGC
CGCCTCCGCCGTTCCGGCCTCCGGGGTCGGATCGCCTGCAGATGGCCTGGGACTGCCGGAGGCTGGTGGC
GGCGGGGCGCGCAGGCTGCGCACGGCTTACACCAACACGCAGCTGCTGGAACTGGAGAAGGAATTCCACT
TTAATAAGTACCTGTGCCGGCCACGCCGCGTCGAGATCGCGGCCTTGCTGGACCTCACCGAAAGGCAGGT
CAAAGTCTGGTTTCAGAACCGGCGCATGAAGCACAAGCGGCAGACGCAGCACCGAGAGCCGCCGGATGGG
GAGCCTGCCTGCCCGGGAGCCCTGGAGGACATCTGCGACCCTGCCGAGGAACCCGCGGCCAGCCCGGGCG
GCCCCTCCGCCTCGCGGGCGGCGTGGGAAGCCTGCTGTCACCCGCCGGAGGTGGTGCCGGGGGCCTTAAG
CGCGGACCCCCGGCCTTTAGCCGTTCGCTTAGAGGGCGCAGGCGCGTCGAGTCCCGGCTGCGCGCTGCGC
GGGGCCGGCGGGCTGGAGCCCGGGCCATTGCCAGAAGACGTCTTCTCGGGGCGCCAGGATTCACCTTTCC
TTCCCGACCTCAACTTCTTCGCGGCCGACTCCTGTCTCCAGCTATCCGGAGGCCTCTCCCCTAGCCTACA
GGGTTCTCTCGACAGCCCGGTCCCTTTTTCCGAGGAAGAGCTGGATTTTTTCACCAGTACGCTCTGTGCC
ATCGACCTGCAGTTTCCCTAA

Translation (356 aa):
MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQK
RAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGG
GGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDG
EPACPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALR
GAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCA
IDLQFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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