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Report for CCDS11723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11723.1 Public Homo sapiens 17 CASKIN2 24 110 108 CCDS HistoryNCBI Gene:57513Re-query CCDS DB by CCDS ID:11723.1Re-query CCDS DB by GeneID:57513See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11723.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321617.8 ENSP00000325355.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321617.8Link to Ensembl Protein Viewer:ENSP00000325355.3Re-query CCDS DB by Nucleotide ID:ENST00000321617Re-query CCDS DB by Protein ID:ENSP00000325355
Original member Current member NCBI NM_020753.5 NP_065804.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020753.5Link to Protein Sequence:NP_065804.2Re-query CCDS DB by Nucleotide ID:NM_020753Re-query CCDS DB by Protein ID:NP_065804Link to BLAST:NP_065804.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065804.2 1202 Q8WXE0-1 1202 100% 0 0

Chromosomal Locations for CCDS 11723.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75501080 75501170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75501468 75501690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75501779 75503254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75503389 75503527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75503659 75503760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75503852 75503962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75504215 75504306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75504420 75504480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75504572 75504693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75504812 75505073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75505557 75505651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75505821 75505929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75506305 75506413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75506583 75506713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75506799 75506894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75506984 75507129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75507584 75507681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75508234 75508285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75513711 75513804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3609 nt):
ATGGGTCGTGAACAGGACCTGATCCTCGCCGTCAAGAATGGAGATGTGACCGGTGTGCAGAAACTGGTGG
CGAAGGTCAAGGCCACAAAGACAAAGCTCCTGGGCTCCACAAAGAGGCTCAACGTGAACTACCAGGATGC
TGATGGATTCTCTGCCCTCCACCACGCTGCTTTGGGGGGCAGCCTGGAGCTCATAGCCTTGCTGCTAGAG
GCTCAGGCCACTGTTGACATCAAGGACAGCAATGGCATGCGCCCGCTGCACTACGCAGCCTGGCAGGGCC
GGCTGGAGCCTGTGAGGCTGCTGCTGCGCGCCTCTGCGGCTGTCAATGCCGCCTCGCTGGACGGACAGAT
CCCCCTGCACCTGGCTGCACAGTATGGACATTATGAGGTGTCAGAAATGCTCCTCCAGCATCAGTCCAAC
CCATGCCTGGTCAACAAGGCCAAGAAGACGCCCCTGGACCTGGCCTGTGAATTTGGCCGACTCAAGGTGG
CCCAGCTGCTTCTGAACAGCCACTTATGTGTGGCACTGCTGGAGGGTGAGGCCAAAGACCCGTGTGACCC
CAACTACACCACGCCCCTGCACTTGGCTGCCAAGAATGGCCACAGAGAAGTCATCAGGCAGCTCCTGAGA
GCTGGGATCGAGATCAACCGCCAGACCAAGACGGGTACGGCGCTCCACGAGGCCGCACTGTATGGCAAGA
CCGAGGTGGTGCGGCTGCTTCTGGAGGGAGGTGTGGACGTGAACATCCGGAATACGTATAACCAGACGGC
GCTGGACATAGTGAATCAGTTCACCACCTCCCAGGCCAGCCGGGAAATCAAGCAGCTACTGCGGGAGGCC
TCAGGGATCCTGAAGGTCCGAGCGCTCAAGGATTTCTGGAACCTCCACGATCCCACTGCTCTCAATGTCC
GGGCAGGGGATGTCATCACGGTGCTAGAACAGCATCCCGACGGCCGCTGGAAGGGCCACATCCACGAGAG
CCAGAGGGGCACAGACCGCATAGGCTACTTCCCCCCGGGCATTGTCGAGGTGGTCAGCAAGCGGGTGGGC
ATCCCTGCAGCCCGCCTCCCCTCCGCACCCACCCCCCTGCGCCCAGGCTTCTCCCGGACACCGCAGCCTC
CTGCCGAAGAACCCCCGCACCCTCTTACCTACAGCCAGCTTCCTCGGGTGGGCCTCAGCCCAGACAGCCC
AGCAGGTGACAGGAATAGTGTGGGCAGTGAGGGCAGCGTGGGCAGCATCCGCAGTGCCGGCAGCGGGCAG
AGCTCTGAGGGCACTAATGGCCATGGCCCTGGCCTCCTGATTGAGAACGCCCAGCCACTGCCCTCTGCTG
GAGAGGACCAGGTGCTGCCAGGACTCCACCCGCCGTCCCTGGCAGACAACCTGAGCCACCGCCCTCTGGC
CAACTGCCGCTCTGGGGAGCAGATCTTCACCCAGGACGTGCGGCCAGAACAGCTGCTGGAGGGGAAGGAC
GCGCAGGCCATTCATAACTGGCTAAGCGAGTTCCAGCTGGAGGGCTACACTGCCCACTTTCTGCAGGCCG
GCTATGATGTGCCTACCATCAGCCGCATGACACCTGAGGACCTGACGGCCATCGGGGTGACCAAGCCTGG
GCACAGGAAGAAGATCGCCTCAGAGATCGCTCAGCTCAGCATCGCCGAGTGGCTGCCCAGCTACATCCCA
ACGGACCTGCTGGAGTGGCTGTGTGCACTGGGGCTGCCACAGTACCACAAGCAGCTGGTGAGCAGCGGCT
ACGACTCCATGGGGCTGGTGGCCGACCTCACCTGGGAGGAGCTGCAGGAGATTGGGGTCAACAAGCTCGG
GCATCAGAAGAAGCTCATGCTGGGGGTGAAGCGGCTGGCGGAGCTTCGGCGGGGCCTGCTGCAGGGGGAG
GCCCTCAGCGAAGGCGGGCGCCGGCTGGCCAAGGGTCCGGAGCTGATGGCCATCGAGGGACTGGAGAACG
GAGAAGGCCCAGCTACAGCTGGCCCACGGCTCCTCACCTTCCAGGGCAGCGAACTAAGCCCAGAGCTACA
GGCGGCCATGGCAGGGGGTGGCCCTGAACCACTCCCCCTCCCACCTGCCCGCTCTCCCAGCCAGGAGAGC
ATCGGGGCACGCTCACGGGGGTCTGGCCACTCACAGGAACAGCCTGCCCCACAGCCCAGCGGTGGAGATC
CCAGCCCCCCCCAGGAGAGGAACCTCCCAGAGGGCACAGAGCGGCCCCCTAAGCTTTGTTCTTCACTTCC
TGGCCAAGGACCCCCACCCTATGTTTTTATGTACCCCCAGGGCTCACCCTCTAGCCCGGCCCCAGGGCCA
CCTCCTGGCGCACCCTGGGCCTTCTCCTACTTGGCCGGGCCCCCTGCCACTCCCCCAGACCCGCCTCGAC
CTAAGCGCCGGTCCCACAGCCTAAGCCGCCCTGGCCCCACAGAGGGGGATGCTGAGGGGGAGGCCGAAGG
GCCAGTGGGCAGCACCCTAGGCAGTTATGCTACCCTTACCCGGCGGCCAGGACGCAGTGCCCTTGTCCGG
ACCAGTCCTAGTGTGACCCCAACCCCAGCTCGGGGGACTCCTCGCAGCCAGTCCTTTGCCCTGCGGGCCC
GGCGCAAAGGCCCCCCGCCCCCGCCCCCCAAGCGCCTCAGCTCCGTCTCTGGCCCCAGCCCGGAGCCACC
TCCACTAGATGAGAGCCCAGGGCCCAAGGAAGGGGCCACAGGGCCCCGAAGGCGAACACTGAGTGAACCT
GCTGGCCCCTCAGAGCCCCCTGGCCCACCTGCCCCGGCTGGGCCCGCGTCAGACACGGAGGAGGAGGAGC
CAGGCCCTGAGGGGACGCCCCCATCTCGGGGCAGCTCTGGGGAAGGGCTGCCGTTTGCAGAGGAAGGGAA
CCTGACCATCAAACAGCGCCCGAAGCCCGCTGGCCCCCCGCCCCGAGAGACACCCGTGCCCCCCGGCCTC
GATTTCAACCTCACGGAATCAGACACTGTTAAGCGGAGGCCCAAGTGCCGGGAGAGAGAGCCACTGCAGA
CCGCACTGCTGGCCTTCGGAGTGGCCAGTGCCACGCCTGGCCCCGCTGCCCCACTGCCTTCCCCAACTCC
TGGCGAGTCTCCTCCAGCTTCTAGCCTTCCCCAGCCCGAGCCCAGCAGCCTTCCAGCCCAAGGAGTTCCA
ACCCCCCTTGCTCCCAGCCCCGCCATGCAGCCTCCAGTGCCGCCCTGCCCAGGGCCAGGTCTGGAAAGCT
CAGCAGCTAGTCGGTGGAATGGGGAGACAGAACCCCCGGCCGCCCCTGCTGCCCTCCTCAAGGTGCCCGG
AGCAGGAACAGCCCCCAAGCCTGTGTCGGTGGCCTGCACCCAGCTGGCATTTTCTGGCCCTAAGCTAGCG
CCCCGGCTCGGCCCCCGCCCAGTGCCTCCTCCACGGCCTGAGAGCACTGGGACTGTGGGCCCAGGCCAGG
CCCAGCAGAGACTGGAGCAGACCAGCTCGTCCCTGGCAGCTGCACTGAGAGCCGCAGAGAAGAGCATTGG
CACCAAGGAGCAAGAGGGCACCCCCAGCGCCTCCACCAAGCACATTCTGGATGACATCAGCACCATGTTC
GACGCCCTGGCTGACCAGCTGGACGCCATGCTGGACTGA

Translation (1202 aa):
MGREQDLILAVKNGDVTGVQKLVAKVKATKTKLLGSTKRLNVNYQDADGFSALHHAALGGSLELIALLLE
AQATVDIKDSNGMRPLHYAAWQGRLEPVRLLLRASAAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSN
PCLVNKAKKTPLDLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLR
AGIEINRQTKTGTALHEAALYGKTEVVRLLLEGGVDVNIRNTYNQTALDIVNQFTTSQASREIKQLLREA
SGILKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVSKRVG
IPAARLPSAPTPLRPGFSRTPQPPAEEPPHPLTYSQLPRVGLSPDSPAGDRNSVGSEGSVGSIRSAGSGQ
SSEGTNGHGPGLLIENAQPLPSAGEDQVLPGLHPPSLADNLSHRPLANCRSGEQIFTQDVRPEQLLEGKD
AQAIHNWLSEFQLEGYTAHFLQAGYDVPTISRMTPEDLTAIGVTKPGHRKKIASEIAQLSIAEWLPSYIP
TDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIGVNKLGHQKKLMLGVKRLAELRRGLLQGE
ALSEGGRRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPARSPSQES
IGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTERPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGP
PPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVR
TSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEP
AGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVPPGL
DFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVP
TPLAPSPAMQPPVPPCPGPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLA
PRLGPRPVPPPRPESTGTVGPGQAQQRLEQTSSSLAAALRAAEKSIGTKEQEGTPSASTKHILDDISTMF
DALADQLDAMLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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