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Report for CCDS11841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11841.1 Public Homo sapiens 18 MTCL1 24 110 108 CCDS HistoryNCBI Gene:23255Re-query CCDS DB by CCDS ID:11841.1Re-query CCDS DB by GeneID:23255See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359865.7 ENSP00000352927.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359865.7Link to Ensembl Protein Viewer:ENSP00000352927.3Re-query CCDS DB by Nucleotide ID:ENST00000359865Re-query CCDS DB by Protein ID:ENSP00000352927
Original member Current member NCBI NM_015210.4 NP_056025.2 Accepted alive Link to Nucleotide Sequence:NM_015210.4Link to Protein Sequence:NP_056025.2Re-query CCDS DB by Nucleotide ID:NM_015210Re-query CCDS DB by Protein ID:NP_056025Link to BLAST:NP_056025.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056025.2 1586 Q9Y4B5-3 1586 100% 0 0

Chromosomal Locations for CCDS 11841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 8718451 8718648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8720338 8720496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8777833 8777892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8783530 8784843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8785936 8786091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8792998 8793120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8796232 8796462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8798097 8798291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8806893 8807060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8812979 8813233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8818963 8819259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8821467 8821498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8824699 8826232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8828908 8828946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4761 nt):
ATGGAAGAGATGAGAGACAGTTATTTAGAGGAAGATGTTTACCAGCTGCAGGAACTTCGGCGAGAACTGG
ACCGCGCTAATAAAAACTGCCGAATCCTGCAGTACCGTCTTCGGAAAGCCGAGCAGAAAAGCCTGAAAGT
GGCTGAGACGGGTCAGGTGGATGGTGAGCTTATTCGAAGCCTGGAGCAGGACTTGAAGGTAGCCAAAGAT
GTATCTGTCAGATTGCACCACGAACTTAAGACGGTGGAGGAAAAGCGCGCTAAAGCTGAGGATGAAAACG
AAACTCTCCGACAGCAGATGATTGAAGTGGAAATATCCAAACAGGCCCTCCAGAATGAGCTGGAGAGACT
GAAAGAGAGTTCCCTAAAAAGAAGAAGCACTCGGGAAATGTACAAGGAGAAGAAAACCTTTAACCAGGAT
GACAGTGCCGATTTGAGGTGCCAGCTCCAGTTTGCCAAAGAGGAAGCCTTCCTGATGCGCAAAAAGATGG
CCAAGCTAGGAAGGGAGAAGGACGAGCTGGAGCAGGAGCTCCAGAAGTACAAGTCCCTCTATGGGGATGT
GGACAGTCCCCTGCCCACGGGGGAAGCAGGCGGGCCCCCCAGCACCCGGGAGGCCGAGCTGAAGCTGCGG
CTAAAGCTGGTGGAGGAGGAAGCCAACATCTTGGGCCGGAAGATCGTGGAGCTGGAGGTGGAGAACCGTG
GCCTCAAGGCAGAGATGGAGGACATGCGGGGCCAGCAGGAGCGGGAGGGCCCGGGTCGGGACCACGCACC
CAGCATTCCTACCTCACCCTTCGGTGACTCCCTGGAGTCCTCCACTGAGCTCCGCCGCCACCTGCAGTTT
GTAGAAGAGGAAGCGGAGTTGCTCCGGAGGTCCATCTCCGAGATCGAAGACCACAACCGGCAACTGACCC
ACGAGCTCAGCAAGTTTAAGTTTGAGCCTCCCCGGGAGCCGGGCTGGCTAGGAGAGGGTGCAAGTCCTGG
TGCCGGGGGTGGGGCCCCCCTGCAGGAGGAGCTGAAGTCAGCCAGGCTGCAGATCAGCGAGCTCAGCGGC
AAGGTGCTCAAACTGCAGCACGAGAACCACGCGCTGCTGTCCAACATCCAGCGCTGCGACCTGGCAGCCC
ACCTGGGGCTGCGTGCCCCCAGTCCCCGGGACAGCGATGCCGAGAGTGATGCGGGCAAGAAGGAGAGTGA
TGGGGAGGAGAGCCGCCTGCCCCAGCCCAAGCGGGAAGGGCCTGTTGGCGGGGAGAGTGACTCGGAGGAA
ATGTTTGAGAAGACGTCGGGCTTCGGGAGCGGGAAGCCATCGGAGGCCAGCGAGCCATGCCCCACGGAGC
TCCTGAAGGCCCGGGAGGACTCTGAGTACCTAGTGACCCTAAAACACGAGGCCCAGCGGCTAGAGCGGAC
GGTGGAGCGCCTCATCACGGACACCGACAGCTTCCTCCATGATGCGGGGCTGCGGGGTGGTGCGCCCTTA
CCGGGGCCTGGCCTCCAGGGCGAAGAGGAGCAGGGTGAGGGGGACCAGCAGGAGCCCCAGCTGCTGGGGA
CCATCAACGCCAAGATGAAGGCTTTCAAGAAAGAGCTGCAGGCCTTCCTGGAGCAGGTGAACCGCATTGG
GGATGGCCTATCCCCCTTGCCCCACCTCACAGAGTCCTCTAGCTTCCTCTCCACTGTGACTTCCGTGTCC
CGGGACTCCCCCATCGGGAACCTGGGGAAGGAGCTGGGCCCAGACTTGCAGTCCAGACTGAAAGAGCAGC
TGGAGTGGCAGCTCGGGCCGGCCCGAGGGGACGAGCGGGAGAGCCTGCGCCTCCGAGCCGCGCGGGAGCT
GCACCGCCGCGCAGACGGGGACACCGGGAGCCACGGGCTGGGAGGCCAGACCTGCTTCAGCCTGGAGCTC
AGGGGCCCCCCCGTTTTACCTGAGCAGAGTGTATCCATAGAGGAGCTACAGGGTCAGCTCGTGCAGGCGG
CCAGACTGCATCAAGAGGAGACAGAGACATTTACAAACAAGATCCATAAGATGGAGGAGGAGCACCTCTA
TGCCTTGAGGTGGAAAGAACTGGAAATGCACAGCCTGGCTTTGCAAAACACCCTCCATGAGCGAACCTGG
AGTGATGAGAAGAATCTGATGCAGCAGGAGCTCCGGTCCTTGAAGCAGAACATTTTCCTCTTCTACGTCA
AACTCAGGTGGCTGCTGAAACACTGGCGGCAAGGGAAGCAGATGGAGGAGGAAGGAGAGGAGTTCACTGA
GGGTGAACATCCAGAGACCCTCTCCAGGCTCGGGGAGCTTGGAGTCCAGGGGGGTCACCAGGCGGATGGC
CCAGACCACGACAGTGACCGAGGCTGTGGCTTTCCAGTGGGGGAGCACTCCCCACACTCCCGGGTGCAGA
TTGGAGATCACAGCTTGCGGCTGCAGACCGCGGACAGGGGACAGCCCCACAAACAGGTGGTGGAAAACCA
GCAGCTGTTCAGCGCCTTCAAGGCCTTGCTGGAGGACTTCCGTGCGGAGCTGCGGGAGGATGAGCGTGCC
CGACTACGGCTGCAGCAGCAATATGCCAGCGACAAGGCGGCCTGGGACGTGGAGTGGGCCGTGCTCAAGT
GCCGTCTGGAACAGCTGGAAGAGAAGACTGAGAACAAGTTGGGAGAACTAGGCTCCTCCGCTGAGAGCAA
GGGGGCCTTGAAGAAGGAGAGAGAGGTGCACCAGAAGCTCCTGGCAGACAGTCACAGCCTGGTCATGGAC
CTGCGCTGGCAGATCCATCACAGCGAGAAGAACTGGAACCGGGAGAAGGTGGAACTTCTCGACCGCCTGG
ACAGAGATCGGCAGGAGTGGGAGCGGCAGAAGAAGGAATTCTTGTGGAGGATAGAGCAGTTGCAGAAAGA
GAACAGTCCCCGGAGAGGTGGCAGTTTCCTCTGTGATCAAAAAGACGGCAACGTTCGCCCCTTTCCCCAC
CAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGCCTTGTGCAGATGCTGACTCCATCCCGTTTG
AAGACCGGCCGCTGTCCAAGCTGAAGGAGTCGGACAGGTGCTCGGCCAGTGAGAATCTCTACCTGGATGC
CTTGTCCCTGGATGACGAGCCAGAAGAGCCACCAGCCCACAGGCCCGAGAGGGAGTTCAGGAACCGCCTC
CCTGAGGAAGAAGAAAATCACAAAGGAAATCTTCAAAGGGCGGTGTCCGTGTCCTCCATGTCTGAGTTCC
AGCGTCTAATGGACATCTCCCCCTTCCTGCCTGAGAAGGGCCTGCCGTCCACCAGCAGCAAGGAGGATGT
CACCCCACCCCTGTCTCCAGACGACCTCAAGTACATCGAGGAGTTCAACAAGAGCTGGGACTACACACCC
AACAGGGGCCACAATGGTGGGGGGCCGGACCTTTGGGCCGACAGGACCGAGGTGGGGCGGGCAGGGCACG
AGGACAGCACAGAGCCTTTCCCCGACTCCTCCTGGTACCTAACCACAAGTGTCACCATGACCACGGACAC
CATGACCAGCCCAGAGCACTGCCAGAAGCAGCCACTGCGGAGCCACGTCCTCACCGAGCAGTCGGGGTTG
CGCGTGTTACACAGCCCGCCTGCCGTGCGCAGGGTCGACAGCATCACGGCGGCAGGTGGTGAGGGTCCCT
TTCCCACAAGCAGAGCCAGAGGGAGCCCGGGAGACACCAAGGGAGGCCCTCCAGAACCCATGCTCAGCAG
GTGGCCTTGCACCTCCCCCAGGCACTCCCGGGACTATGTGGAGGGGGCACGGCGCCCCCTTGATAGTCCC
CTCTGTACCTCCCTGGGGTTTGCCTCCCCACTGCACAGCCTGGAGATGTCCAAGAACTTGAGTGATGACA
TGAAGGAGGTGGCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCGAGCTGCAAGTCAAGGACAT
GGCCTGCCAGACCAATGGGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCAGTGTGGGCTTGCAG
ACTGAAGCCCTGCGTGGCAGCGGTGTCACCAGCAGCCCCCACAAGTGTCTCACTCCAAAGGCTGGGGGCG
GTGCTACACCCGTGTCGTCTCCTTCCCGGAGCCTTAGGAGCAGACAGGTGGCCCCTGCCATCGAGAAGGT
GCAGGCCAAGTTTGAACGCACATGCTGCTCCCCCAAGTATGGTTCTCCCAAGCTGCAGAGGAAGCCCCTC
CCCAAAGCCGACCAGCCAAATAACAGGACGTCACCAGGGATGGCCCAGAAAGGGTACAGTGAGTCAGCCT
GGGCCCGCTCCACCACCACAAGGGAGAGCCCCGTGCACACCACCATTAATGATGGCCTCTCCAGCCTCTT
CAACATCATTGACCACAGCCCCGTGGTGCAGGACCCCTTCCAGAAGGGGCTGCGGGCCGGCAGTCGGTCT
CGCTCAGCAGAGCCCCGACCAGAGCTGGGCCCAGGCCAGGAAACAGGCACCAATTCCCGAGGAAGGTCGC
CTAGCCCCATTGGGGTGGGGTCAGAGATGTGCAGGGAGGAAGGGGGAGAGGGCACGCCAGTGAAGCAGGA
CTTATCTGCTCCCCCTGGCTACACGCTCACTGAGAACGTGGCCCGGATCCTCAACAAGAAGCTGCTGGAA
CATGCCTTAAAGGAGGAGAGGAGGCAGGCTGCCCACGGGCCCCCGGGTCTCCACAGTGACAGCCACTCGC
TGGGGGACACAGCCGAGCCAGGGCCCATGGAGAACCAAACTGTCTTGCTAACTGCCCCCTGGGGACTCTA
G

Translation (1586 aa):
MEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAKD
VSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQD
DSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTREAELKLR
LKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLESSTELRRHLQF
VEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREPGWLGEGASPGAGGGAPLQEELKSARLQISELSG
KVLKLQHENHALLSNIQRCDLAAHLGLRAPSPRDSDAESDAGKKESDGEESRLPQPKREGPVGGESDSEE
MFEKTSGFGSGKPSEASEPCPTELLKAREDSEYLVTLKHEAQRLERTVERLITDTDSFLHDAGLRGGAPL
PGPGLQGEEEQGEGDQQEPQLLGTINAKMKAFKKELQAFLEQVNRIGDGLSPLPHLTESSSFLSTVTSVS
RDSPIGNLGKELGPDLQSRLKEQLEWQLGPARGDERESLRLRAARELHRRADGDTGSHGLGGQTCFSLEL
RGPPVLPEQSVSIEELQGQLVQAARLHQEETETFTNKIHKMEEEHLYALRWKELEMHSLALQNTLHERTW
SDEKNLMQQELRSLKQNIFLFYVKLRWLLKHWRQGKQMEEEGEEFTEGEHPETLSRLGELGVQGGHQADG
PDHDSDRGCGFPVGEHSPHSRVQIGDHSLRLQTADRGQPHKQVVENQQLFSAFKALLEDFRAELREDERA
RLRLQQQYASDKAAWDVEWAVLKCRLEQLEEKTENKLGELGSSAESKGALKKEREVHQKLLADSHSLVMD
LRWQIHHSEKNWNREKVELLDRLDRDRQEWERQKKEFLWRIEQLQKENSPRRGGSFLCDQKDGNVRPFPH
QGSLRMPRPVAMWPCADADSIPFEDRPLSKLKESDRCSASENLYLDALSLDDEPEEPPAHRPEREFRNRL
PEEEENHKGNLQRAVSVSSMSEFQRLMDISPFLPEKGLPSTSSKEDVTPPLSPDDLKYIEEFNKSWDYTP
NRGHNGGGPDLWADRTEVGRAGHEDSTEPFPDSSWYLTTSVTMTTDTMTSPEHCQKQPLRSHVLTEQSGL
RVLHSPPAVRRVDSITAAGGEGPFPTSRARGSPGDTKGGPPEPMLSRWPCTSPRHSRDYVEGARRPLDSP
LCTSLGFASPLHSLEMSKNLSDDMKEVAFSVRNAICSGPGELQVKDMACQTNGSRTMGTQTVQTISVGLQ
TEALRGSGVTSSPHKCLTPKAGGGATPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPL
PKADQPNNRTSPGMAQKGYSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPVVQDPFQKGLRAGSRS
RSAEPRPELGPGQETGTNSRGRSPSPIGVGSEMCREEGGEGTPVKQDLSAPPGYTLTENVARILNKKLLE
HALKEERRQAAHGPPGLHSDSHSLGDTAEPGPMENQTVLLTAPWGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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