NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11846.1 Public Homo sapiens 18 TXNDC2 24 110 108 CCDS HistoryNCBI Gene:84203Re-query CCDS DB by CCDS ID:11846.1Re-query CCDS DB by GeneID:84203See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11846.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357775.6 ENSP00000350419.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357775.6Link to Ensembl Protein Viewer:ENSP00000350419.4Re-query CCDS DB by Nucleotide ID:ENST00000357775Re-query CCDS DB by Protein ID:ENSP00000350419
Original member Current member NCBI NM_032243.6 NP_115619.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032243.6Link to Protein Sequence:NP_115619.4Re-query CCDS DB by Nucleotide ID:NM_032243Re-query CCDS DB by Protein ID:NP_115619Link to BLAST:NP_115619.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115619.4 486 Q86VQ3-2 486 100% 0 0

Chromosomal Locations for CCDS 11846.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 9886681 9888141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGGTCAGCCACACGTTCCACATGCGCACAGAGGAGTCTGATGCCTCACAGGAGGGCGATGACCTACCCA
AGTCCTCAGCAAACACCAGCCATCCCAAGCAGGATGACAGCCCCAAGTCCTCAGAAGAAACCATCCAGCC
CAAGGAGGGTGACATCCCCAAGGCCCCAGAAGAAACCATCCAATCCAAGAAGGAGGACCTCCCCAAGTCC
TCAGAAAAAGCCATCCAGCCCAAAGAGAGTAACATCCCCAAGTCCTCAGCAAAACCCATCCAGCCCAAGC
TGGGCAATATTCCCAAGGCCTCAGTGAAGCCCAGCCAGCCCAAGGAGGGTGACATCCCCAAGGCCCCAGA
AGAAACCATCCAATCCAAGAAGGAGGACCTCCCCAAGTCCTCAGAAGAAGCCATCCAGCCCAAAGAGGGT
GACATCCCCAAGTCCTCAGCAAAACCCATCCAGCCCAAGCTGGGCAATATTGCCAAGACCTCAGTGAAGC
CCAGCCAGCCCAAGGAGAGTGATATCCCCAAGTCCCCAGAAGAAACCATCCAGCCCAAGGAGGGTGACAT
CCCCAAGTCCTCAGCAAAGCCCATCCAGCCCAAGCTGGGCAATATTCCCAAGGCCTCAGTGAAGCCCAGC
CAGCCCAAGGAGGGTGACATCTCCAAGTCCCCAGAAGAAGCCATCCAGCCCAAGGAGGGTGACCTCCCCA
AGTCCCTAGAGGAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAAGAAGCCATCCAGCC
CAAGGAGGGTGACATCCCCAAGTCCCTAGAGGAAGCCATCCAGCCTAAGGAGGGTGACATCCCCAAGTCC
CCAGAAGAAACCATCCAGCCCAAGAAGGGTGACATCCCCAAGTCCCCAGAAGAAGCCATCCAGCCCAAGG
AGGGTGACATTCCCAAGTCTCCAAAACAAGCCATCCAGCCCAAGGAGGGTGACATTCCCAAGTCCCTAGA
GGAAGCCATCCCACCCAAGGAGATTGACATCCCCAAGTCCCCAGAAGAAACCATCCAGCCCAAGGAGGAT
GACAGCCCCAAGTCCCTAGAAGAAGCCACCCCATCCAAGGAGGGTGACATCCTAAAGCCTGAAGAAGAAA
CAATGGAGTTCCCGGAGGGGGACAAGGTGAAAGTGATCCTGAGCAAGGAGGACTTTGAGGCATCACTGAA
GGAGGCCGGGGAGAGGCTGGTGGCTGTGGACTTCTCGGCCACGTGGTGTGGGCCCTGCAGGACCATCAGA
CCATTCTTCCATGCCCTGTCTGTGAAGCATGAGGATGTGGTGTTCCTGGAGGTGGACGCTGACAACTGTG
AGGAGGTGGTGAGAGAGTGCGCCATCATGTGTGTCCCAACCTTTCAGTTTTATAAAAAAGAAGAAAAGGT
GGATGAACTTTGCGGCGCCCTTAAGGAAAAACTTGAAGCAGTCATTGCAGAATTAAAGTAA

Translation (486 aa):
MVSHTFHMRTEESDASQEGDDLPKSSANTSHPKQDDSPKSSEETIQPKEGDIPKAPEETIQSKKEDLPKS
SEKAIQPKESNIPKSSAKPIQPKLGNIPKASVKPSQPKEGDIPKAPEETIQSKKEDLPKSSEEAIQPKEG
DIPKSSAKPIQPKLGNIAKTSVKPSQPKESDIPKSPEETIQPKEGDIPKSSAKPIQPKLGNIPKASVKPS
QPKEGDISKSPEEAIQPKEGDLPKSLEEAIQPKEGDIPKSPEEAIQPKEGDIPKSLEEAIQPKEGDIPKS
PEETIQPKKGDIPKSPEEAIQPKEGDIPKSPKQAIQPKEGDIPKSLEEAIPPKEIDIPKSPEETIQPKED
DSPKSLEEATPSKEGDILKPEEETMEFPEGDKVKVILSKEDFEASLKEAGERLVAVDFSATWCGPCRTIR
PFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAELK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH