NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11853.1 Public Homo sapiens 18 MPPE1 24 110 108 CCDS HistoryNCBI Gene:65258Re-query CCDS DB by CCDS ID:11853.1Re-query CCDS DB by GeneID:65258See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588072.6 ENSP00000465894.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000588072.6Link to Ensembl Protein Viewer:ENSP00000465894.1Re-query CCDS DB by Nucleotide ID:ENST00000588072Re-query CCDS DB by Protein ID:ENSP00000465894
Original member Current member NCBI NM_023075.6 NP_075563.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023075.6Link to Protein Sequence:NP_075563.3Re-query CCDS DB by Nucleotide ID:NM_023075Re-query CCDS DB by Protein ID:NP_075563Link to BLAST:NP_075563.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075563.3 396 Q53F39-1 396 100% 0 0

Chromosomal Locations for CCDS 11853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 11884445 11884627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11885676 11885816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11886499 11886621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11886713 11886778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11886917 11887025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11888669 11888743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11889387 11889490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11893468 11893576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11896984 11897264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGCGATGATCGAATTGGGGTTTGGAAGACAGAATTTTCATCCATTAAAGAGGAAGAGTTCATTGCTGT
TGAAACTCATAGCTGTTGTCTTTGCTGTGCTTCTATTTTGTGAATTTTTAATCTATTACTTAGCGATCTT
TCAGTGTAATTGGCCTGAAGTGAAAACCACAGCCTCTGATGGTGAACAGACCACACGTGAGCCTGTGCTC
AAAGCCATGTTTTTGGCTGACACCCATTTGCTTGGGGAATTCCTAGGCCACTGGCTGGACAAATTACGAA
GGGAATGGCAGATGGAGAGAGCGTTCCAGACAGCTCTGTGGTTGCTGCAGCCGGAAGTCGTCTTCATCCT
GGGGGATATCTTTGATGAAGGGAAGTGGAGCACCCCTGAGGCCTGGGCGGATGATGTGGAGCGGTTTCAG
AAAATGTTCAGACACCCAAGTCATGTACAGCTGAAGGTAGTTGCTGGAAACCATGACATTGGCTTCCATT
ATGAGATGAACACATACAAAGTAGAACGCTTTGAGAAAGTGTTCAGCTCTGAAAGACTGTTTTCTTGGAA
AGGCATTAACTTTGTGATGGTCAACAGCGTGGCGCTGAACGGGGATGGCTGTGGCATCTGCTCTGAAACA
GAAGCAGAGCTCATTGAAGTTTCTCACAGACTGAACTGCTCCCGAGAGGCACGTGGCTCCAGCCGGTGTG
GACCTGGGCCTCTGCTGCCCACGTCTGCCCCTGTCCTCCTGCAGCATTATCCTCTGTATCGGAGAAGTGA
TGCTAACTGTTCTGGGGAAGACGCTGCTCCTGCAGAGGAAAGGGACATCCCATTTAAGGAGAACTATGAC
GTGCTTTCACGGGAGGCATCACAAAAGCTGCTGTGGTGGCTCCAGCCGCGCCTGGTTCTCAGTGGCCACA
CGCACAGCGCCTGCGAGGTGCACCACGGGGGCCGAGTCCCCGAGCTCAGCGTCCCATCTTTCAGTTGGAG
GAACAGAAACAACCCCAGTTTCATCATGGGTAGCATCACGCCCACAGACTACACCCTCTCCAAGTGCTAC
CTCCCACGTGAGGATGTGGTTTTGATCATCTACTGTGGAGTGGTGGGCTTCCTTGTGGTCCTCACACTCA
CTCACTTTGGGCTTCTAGCCTCACCTTTTCTTTCTGGTTTGAACTTGCTCGGAAAGCGTAAGACAAGATG
A

Translation (396 aa):
MAMIELGFGRQNFHPLKRKSSLLLKLIAVVFAVLLFCEFLIYYLAIFQCNWPEVKTTASDGEQTTREPVL
KAMFLADTHLLGEFLGHWLDKLRREWQMERAFQTALWLLQPEVVFILGDIFDEGKWSTPEAWADDVERFQ
KMFRHPSHVQLKVVAGNHDIGFHYEMNTYKVERFEKVFSSERLFSWKGINFVMVNSVALNGDGCGICSET
EAELIEVSHRLNCSREARGSSRCGPGPLLPTSAPVLLQHYPLYRRSDANCSGEDAAPAEERDIPFKENYD
VLSREASQKLLWWLQPRLVLSGHTHSACEVHHGGRVPELSVPSFSWRNRNNPSFIMGSITPTDYTLSKCY
LPREDVVLIIYCGVVGFLVVLTLTHFGLLASPFLSGLNLLGKRKTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH