NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11867.1 Public Homo sapiens 18 RNMT 24 110 108 CCDS HistoryNCBI Gene:8731Re-query CCDS DB by CCDS ID:11867.1Re-query CCDS DB by GeneID:8731See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11867.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262173.7 ENSP00000262173.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262173.7Link to Ensembl Protein Viewer:ENSP00000262173.3Re-query CCDS DB by Nucleotide ID:ENST00000262173Re-query CCDS DB by Protein ID:ENSP00000262173
Original member Current member EBI ENST00000383314.7 ENSP00000372804.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383314.7Link to Ensembl Protein Viewer:ENSP00000372804.2Re-query CCDS DB by Nucleotide ID:ENST00000383314Re-query CCDS DB by Protein ID:ENSP00000372804
Original member Current member EBI ENST00000543302.6 ENSP00000446426.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543302.6Link to Ensembl Protein Viewer:ENSP00000446426.1Re-query CCDS DB by Nucleotide ID:ENST00000543302Re-query CCDS DB by Protein ID:ENSP00000446426
Original member Current member EBI ENST00000589866.5 ENSP00000466252.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589866.5Link to Ensembl Protein Viewer:ENSP00000466252.1Re-query CCDS DB by Nucleotide ID:ENST00000589866Re-query CCDS DB by Protein ID:ENSP00000466252
Original member Current member NCBI NM_001378135.1 NP_001365064.1 Accepted alive Link to Nucleotide Sequence:NM_001378135.1Link to Protein Sequence:NP_001365064.1Re-query CCDS DB by Nucleotide ID:NM_001378135Re-query CCDS DB by Protein ID:NP_001365064Link to BLAST:NP_001365064.1
Original member Current member NCBI NM_003799.3 NP_003790.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003799.3Link to Protein Sequence:NP_003790.1Re-query CCDS DB by Nucleotide ID:NM_003799Re-query CCDS DB by Protein ID:NP_003790Link to BLAST:NP_003790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365064.1 476 O43148-1 476 100% 0 0
NP_003790.1 476 O43148-1 476 100% 0 0

Chromosomal Locations for CCDS 11867.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 13731518 13731934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13734464 13734599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13737010 13737135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13740167 13740279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13741510 13741691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13742488 13742652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13746220 13746337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13752326 13752427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13754114 13754147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13759942 13759979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCAAATTCTGCAAAAGCAGAAGAATATGAAAAGATGTCTCTTGAACAGGCAAAAGCGTCAGTGAATT
CTGAAACAGAGTCTTCATTCAATATTAATGAAAACACAACAGCTTCTGGGACTGGGCTTTCTGAAAAGAC
TTCTGTCTGTAGGCAAGTAGACATAGCAAGAAAGAGAAAAGAGTTTGAAGATGATCTTGTAAAGGAAAGT
TCTAGTTGTGGGAAAGACACTCCATCCAAGAAGAGAAAACTTGATCCTGAAATTGTCCCAGAGGAAAAAG
ATTGTGGTGATGCTGAAGGCAATTCAAAGAAAAGAAAAAGAGAAACTGAGGATGTTCCAAAAGATAAATC
TTCTACTGGAGATGGCACTCAAAATAAGAGAAAAATAGCACTTGAGGATGTTCCTGAAAAGCAGAAAAAT
CTGGAAGAAGGACACAGCTCAACAGTGGCTGCCCATTACAATGAACTTCAGGAAGTTGGTTTGGAGAAGC
GTAGTCAAAGTCGTATTTTTTACCTAAGAAACTTTAATAATTGGATGAAAAGTGTTCTCATTGGAGAATT
TTTGGAAAAGGTACGACAGAAGAAAAAACGTGATATCACTGTTTTGGACCTGGGATGTGGTAAAGGTGGA
GATTTGCTGAAATGGAAAAAAGGAAGAATTAACAAGCTAGTTTGTACTGATATTGCCGATGTTTCTGTCA
AACAGTGTCAGCAGCGGTATGAGGACATGAAAAATCGTCGTGATAGTGAATATATTTTCAGTGCAGAATT
TATAACTGCTGACAGCTCAAAGGAACTTCTGATTGACAAATTTCGTGACCCACAAATGTGTTTTGACATC
TGCAGTTGTCAGTTTGTCTGTCATTACTCATTTGAGTCTTATGAGCAGGCTGACATGATGCTGAGAAATG
CGTGTGAGAGACTTAGCCCTGGGGGCTATTTTATTGGTACTACTCCCAATAGCTTTGAATTGATAAGACG
CCTTGAAGCTTCAGAAACAGAATCATTTGGAAATGAAATATATACTGTGAAATTTCAGAAGAAAGGAGAT
TATCCTTTATTTGGCTGCAAATATGACTTCAACTTGGAAGGTGTTGTGGATGTTCCTGAATTCTTGGTCT
ATTTTCCATTGCTAAATGAAATGGCAAAGAAGTACAATATGAAACTAGTCTACAAAAAAACATTTCTGGA
ATTCTACGAAGAAAAGATTAAGAACAATGAAAATAAAATGCTCTTAAAACGAATGCAGGCCTTGGAGCCA
TATCCTGCAAATGAGAGTTCTAAACTTGTCTCTGAGAAGGTGGATGACTATGAACATGCAGCAAAGTACA
TGAAGAACAGTCAAGTAAGGTTACCTTTGGGAACCTTAAGTAAATCAGAATGGGAAGCTACAAGTATTTA
CTTGGTGTTTGCCTTTGAGAAACAGCAGTGA

Translation (476 aa):
MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRKEFEDDLVKES
SSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTGDGTQNKRKIALEDVPEKQKN
LEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGG
DLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDI
CSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGD
YPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH