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Report for CCDS11903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11903.1 Public Homo sapiens 18 RNF138 24 110 108 CCDS HistoryNCBI Gene:51444Re-query CCDS DB by CCDS ID:11903.1Re-query CCDS DB by GeneID:51444See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11903.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261593.8 ENSP00000261593.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261593.8Link to Ensembl Protein Viewer:ENSP00000261593.3Re-query CCDS DB by Nucleotide ID:ENST00000261593Re-query CCDS DB by Protein ID:ENSP00000261593
Original member Current member NCBI NM_001191324.2 NP_001178253.2 Accepted alive Link to Nucleotide Sequence:NM_001191324.2Link to Protein Sequence:NP_001178253.2Re-query CCDS DB by Nucleotide ID:NM_001191324Re-query CCDS DB by Protein ID:NP_001178253Link to BLAST:NP_001178253.2
Original member Current member NCBI NM_016271.5 NP_057355.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016271.5Link to Protein Sequence:NP_057355.2Re-query CCDS DB by Nucleotide ID:NM_016271Re-query CCDS DB by Protein ID:NP_057355Link to BLAST:NP_057355.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001178253.2 245 Q8WVD3-1 245 100% 0 0
NP_057355.2 245 Q8WVD3-1 245 100% 0 0

Chromosomal Locations for CCDS 11903.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32092777 32092886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32111754 32111919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32113745 32113860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32123518 32123574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32124734 32124845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32126693 32126800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32129119 32129187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCCGAGGACCTCTCTGCGGCCACGTCCTACACCGAAGATGATTTCTACTGCCCCGTCTGTCAGGAGG
TGCTCAAAACGCCCGTGCGGACCACGGCCTGTCAGCACGTTTTCTGTAGAAAATGTTTCCTGACTGCAAT
GAGGGAAAGCGGAGCACATTGTCCCCTATGTCGTGGAAATGTGACTAGAAGAGAGAGAGCATGTCCTGAA
CGGGCCTTAGACCTTGAAAATATAATGAGGAAGTTTTCTGGTAGCTGCAGATGCTGTGCAAAACAGATTA
AATTCTATCGCATGAGACATCATTACAAATCTTGTAAGAAGTATCAGGATGAATATGGTGTTTCTTCTAT
CATTCCAAACTTTCAGATCTCTCAAGATTCAGTAGGGAACAGCAATAGGAGTGAAACATCCACATCTGAT
AACACAGAAACTTACCAAGAGAATACAAGTTCTTCTGGTCATCCTACTTTTAAGTGTCCCCTGTGTCAAG
AATCAAATTTTACCAGACAGCGTTTACTGGATCACTGTAACAGTAATCACCTATTTCAGATAGTTCCTGT
GACATGTCCTATTTGTGTGTCTCTTCCTTGGGGAGATCCTAGCCAGATTACCAGAAATTTCGTTAGTCAT
CTAAATCAGAGACATCAATTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAAGAAACCCAATACC
AAACTGCTGTTGAAGAATCTTTTCAAGTAAACATCTGA

Translation (245 aa):
MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPE
RALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPNFQISQDSVGNSNRSETSTSD
NTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSH
LNQRHQFDYGEFVNLQLDEETQYQTAVEESFQVNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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