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Report for CCDS11907.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11907.2 Public Homo sapiens 18 NOL4 24 110 108 CCDS HistoryNCBI Gene:8715Re-query CCDS DB by CCDS ID:11907.2Re-query CCDS DB by GeneID:8715See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11907.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261592.10 ENSP00000261592.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261592.10Link to Ensembl Protein Viewer:ENSP00000261592.4Re-query CCDS DB by Nucleotide ID:ENST00000261592Re-query CCDS DB by Protein ID:ENSP00000261592
Original member Current member NCBI NM_003787.5 NP_003778.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003787.5Link to Protein Sequence:NP_003778.2Re-query CCDS DB by Nucleotide ID:NM_003787Re-query CCDS DB by Protein ID:NP_003778Link to BLAST:NP_003778.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003778.2 638 O94818-1 638 100% 0 0

Chromosomal Locations for CCDS 11907.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 33852842 33853035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33883244 33883424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33943065 33943178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33957326 33957517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33958239 33958418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34019318 34019601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34093465 34093597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34104047 34104159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34105049 34105160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34129871 34130020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34222990 34223253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGAGAGCGAGCGCGACATGTACCGCCAGTTCCAGGACTGGTGCCTCAGGACTTACGGGGACTCAGGCA
AGACCAAGACGGTGACCCGTAAAAAATACGAACGGATCGTCCAGCTCCTCAATGGCTCCGAGTCGAGCTC
CACGGACAACGCCAAATTTAAATTCTGGGTCAAATCGAAGGGCTTCCAGCTGGGCCAGCCGGACGAGGTC
CGCGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTACGTGCCTGTCAAGACCACGGATGGCGTAGGGGTAG
ATGAGAAGCTATCTTTACGACGGGTAGCTGTGGTTGAAGATTTCTTTGACATTATTTATTCGATGCATGT
GGAAACGGGGCCAAATGGAGAACAAATTCGGAAACACGCTGGACAAAAGAGAACTTACAAAGCAATTTCA
GAGAGCTATGCCTTCCTACCAAGAGAAGCGGTGACACGATTTCTAATGAGCTGCTCAGAGTGCCAGAAAA
GAATGCATTTAAACCCAGATGGAACAGATCATAAAGATAATGGAAAACCTCCCACTTTGGTGACCAGCAT
GATTGACTACAACATGCCAATTACCATGGCCTACATGAAACACATGAAGCTGCAGCTGCTAAACTCACAG
CAAGATGAGGATGAAAGTTCAATAGAAAGTGATGAATTTGACATGAGTGATTCAACACGGATGTCAGCTG
TGAACTCTGATCTTAGCTCCAATCTTGAAGAAAGAATGCAAAGTCCCCAGAATCTTCATGGCCAGCAAGA
TGATGATTCTGCTGCAGAGAGCTTTAATGGCAATGAGACTCTGGGGCACAGTTCAATTGCTTCAGGGGGA
ACACACAGCAGGGAGATGGGAGACTCCAACAGTGATGGCAAAACTGGGCTGGAGCAAGATGAACAGCCAC
TGAACCTGAGTGACAGTCCCCTCTCTGCGCAGCTAACTTCGGAATACAGAATAGATGATCACAACAGTAA
TGGGAAAAACAAGTATAAGAATCTTCTAATTTCTGACCTCAAGATGGAACGAGAGGCGAGAGAAAATGGA
AGCAAGTCTCCTGCACATAGTTACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTAGACCGAGGAGCTG
AGGACCTCTCACTAAACAGGGGAGATGAGGACGAAGATGACCACGAGGACCATGACGATTCGGAGAAAGT
TAATGAGACAGACGGCGTTGAAGCCGAGCGGCTGAAAGCTTTTAATATGTTTGTCAGGCTGTTTGTAGAT
GAAAACTTGGACCGAATGGTCCCAATCTCTAAGCAGCCCAAAGAAAAGATCCAGGCTATCATTGACTCAT
GCAGGCGACAATTCCCTGAGTATCAAGAGCGTGCCAGAAAACGTATACGTACTTACCTCAAGTCCTGCAG
GCGGATGAAAAGAAGTGGTTTTGAGATGTCTCGACCTATTCCTTCCCACCTTACTTCAGCAGTTGCAGAG
AGTATCTTGGCTTCAGCTTGTGAGAGTGAGAGTAGAAATGCCGCCAAGAGGATGCGTCTGGAGAGACAGC
AGGATGAGTCTGCTCCAGCTGACAAACAGTGTAAACCAGAGGCGACCCAGGCCACTTACTCAACATCAGC
TGTTCCAGGCTCACAGGACGTGCTGTACATCAATGGAAATGGGACCTATAGTTACCATAGTTACAGAGGG
CTAGGAGGGGGTCTGCTAAATCTGAATGATGCTTCCAGCAGTGGACCCACTGATCTCAGCATGAAGAGAC
AATTGGCGACTAGCTCAGGATCCTCCAGCAGCTCAAACTCCAGACCCCAGCTGAGTCCAACTGAAATCAA
TGCCGTGAGACAGCTTGTTGCAGGATATCGAGAATCAGCTGCATTTTTATTGCGATCTGCAGATGAACTG
GAAAATCTCATTTTACAACAGAACTGA

Translation (638 aa):
MESERDMYRQFQDWCLRTYGDSGKTKTVTRKKYERIVQLLNGSESSSTDNAKFKFWVKSKGFQLGQPDEV
RGGGGGAKQVLYVPVKTTDGVGVDEKLSLRRVAVVEDFFDIIYSMHVETGPNGEQIRKHAGQKRTYKAIS
ESYAFLPREAVTRFLMSCSECQKRMHLNPDGTDHKDNGKPPTLVTSMIDYNMPITMAYMKHMKLQLLNSQ
QDEDESSIESDEFDMSDSTRMSAVNSDLSSNLEERMQSPQNLHGQQDDDSAAESFNGNETLGHSSIASGG
THSREMGDSNSDGKTGLEQDEQPLNLSDSPLSAQLTSEYRIDDHNSNGKNKYKNLLISDLKMEREARENG
SKSPAHSYSSYDSGKNESVDRGAEDLSLNRGDEDEDDHEDHDDSEKVNETDGVEAERLKAFNMFVRLFVD
ENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQERARKRIRTYLKSCRRMKRSGFEMSRPIPSHLTSAVAE
SILASACESESRNAAKRMRLERQQDESAPADKQCKPEATQATYSTSAVPGSQDVLYINGNGTYSYHSYRG
LGGGLLNLNDASSSGPTDLSMKRQLATSSGSSSSSNSRPQLSPTEINAVRQLVAGYRESAAFLLRSADEL
ENLILQQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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