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Report for CCDS11979.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11979.2 Public Homo sapiens 18 RELCH 24 110 108 CCDS HistoryNCBI Gene:57614Re-query CCDS DB by CCDS ID:11979.2Re-query CCDS DB by GeneID:57614See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11979.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398130.6 ENSP00000381198.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398130.6Link to Ensembl Protein Viewer:ENSP00000381198.2Re-query CCDS DB by Nucleotide ID:ENST00000398130Re-query CCDS DB by Protein ID:ENSP00000381198
Original member Current member NCBI NM_020854.4 NP_065905.2 Accepted alive Link to Nucleotide Sequence:NM_020854.4Link to Protein Sequence:NP_065905.2Re-query CCDS DB by Nucleotide ID:NM_020854Re-query CCDS DB by Protein ID:NP_065905Link to BLAST:NP_065905.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065905.2 1216 Q9P260-1 1216 100% 0 0

Chromosomal Locations for CCDS 11979.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 62187506 62188031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62211153 62211242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62221037 62221108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62221219 62221274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62221384 62221497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62227289 62227492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62227598 62227689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62228305 62228598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62231194 62231269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62232332 62232427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62244764 62244876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62252664 62252754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62255407 62255478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62257948 62258088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62258512 62258676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62261511 62261658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62263989 62264145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62264729 62264852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62266701 62266749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62268869 62268948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62273980 62274086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62275374 62275473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62280360 62280442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62280646 62280709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62282306 62282444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62287351 62287467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62291543 62291631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62298790 62298860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62305414 62305534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3651 nt):
ATGGCGGCGATGGCGCCTGGAGGTAGTGGCAGTGGTGGCGGCGTGAATCCATTTCTCAGTGATTCGGATG
AGGACGATGACGAGGTAGCTGCAACAGAGGAACGGCGGGCAGTACTTCGGCTGGGCGCCGGAAGTGGCCT
AGATCCTGGCTCTGCGGGCTCGCTGTCGCCACAGGATCCCGTGGCCTTAGGAAGCAGTGCGCGGCCAGGG
CTCCCTGGGGAGGCGTCGGCGGCTGCAGTGGCCCTGGGGGGCACCGGGGAGACCCCGGCCCGATTATCAA
TTGATGCGATCGCTGCTCAGCTGTTGCGCGATCAATACTTGCTGACCGCCCTGGAGCTGCATACCGAGCT
GTTAGAGAGTGGCCGGGAGCTGCCTCGGCTGCGCGACTACTTCTCCAATCCAGGCAACTTCGAGAGGCAA
AGTGGAACCCCGCCGGGGATGGGGGCGCCAGGGGTCCCTGGAGCAGCCGGCGTTGGGGGCGCTGGAGGTC
GGGAACCGAGTACAGCGTCGGGCGGGGGACAGCTCAATCGAGCTGGGAGCATTAGTACCCTTGATTCTTT
AGACTTTGCAAGATATTCAGATGATGGTAACAGGGAAACAGATGAAAAAGTGGCAGTCCTGGAGTTTGAA
CTACGGAAAGCCAAGGAGACCATTCAGGCCCTCCGAGCCAACCTGACAAAGGCCGCAGAACATGAAGTTC
CTTTACAGGAACGAAAAAATTACAAATCAAGTCCTGAAATTCAGGAGCCAATCAAACCTCTTGAAAAGAG
AGCTCTAAACTTCTTAGTCAATGAATTTTTATTGAAGAATAACTATAAGCTTACATCAATAACCTTTTCA
GATGAAAACGATGATCAGGATTTTGAATTATGGGATGATGTAGGATTAAACATTCCAAAACCTCCAGACT
TATTGCAACTCTACCGGGATTTTGGAAATCATCAAGTAACTGGAAAAGATCTTGTAGATGTGGCCAGTGG
AGTAGAAGAAGATGAATTAGAGGCCCTTACACCAATTATAAGCAACCTTCCTCCAACTCTTGAAACTCCC
CAGCCTGCAGAGAACTCCATGTTAGTACAGAAATTAGAAGATAAAATTAGTTTGTTAAATAGTGAGAAAT
GGTCATTGATGGAGCAAATCAGAAGACTTAAAAGTGAAATGGACTTCCTCAAAAATGAACACTTTGCCAT
CCCAGCAGTTTGTGACTCTGTTCAGCCTCCTTTGGATCAGTTGCCCCACAAAGACTCTGAGGACAGTGGA
CAGCATCCAGATGTAAATAGTTCAGACAAGGGAAAAAACACAGACATCCATCTTTCAATATCAGATGAAG
CTGATTCCACTATTCCTAAAGAGAATTCCCCAAATTCATTCCCCAGGAGAGAAAGAGAAGGAATGCCACC
TTCTTCTCTATCAAGTAAAAAGACAGTTCATTTTGATAAACCTAATAGGAAATTGTCTCCTGCATTCCAT
CAAGCACTACTCTCTTTTTGTCGAATGTCAGCAGATAGTCGTTTAGGATACGAGGTGTCTCGTATTGCAG
ACAGTGAAAAAAGCGTTATGTTAATGCTGGGACGCTGCCTGCCACACATTGTTCCCAATGTGCTATTGGC
AAAGAGAGAGGAGTTGATCCCCCTCATATTGTGTACAGCATGTCTACATCCTGAGCCTAAAGAGCGAGAT
CAGCTTCTCCACATACTTTTCAATTTGATCAAGAGGCCAGATGATGAGCAAAGGCAAATGATACTGACAG
GTTGTGTGGCATTTGCGCGTCATGTTGGACCAACACGTGTAGAAGCTGAACTTTTACCACAGTGTTGGGA
ACAGATTAATCACAAATACCCAGAAAGACGACTGCTTGTGGCAGAATCCTGTGGAGCACTGGCACCTTAC
CTTCCTAAAGAAATCCGTAGCTCCTTGGTTCTTTCAATGTTGCAACAAATGTTAATGGAAGATAAGGCAG
ATTTGGTAAGAGAAGCTGTTATCAAAAGCCTTGGTATCATTATGGGATACATTGATGATCCAGACAAATA
TCATCAGGGTTTTGAATTGTTGCTGTCAGCCTTGGGTGATCCCTCAGAAAGAGTAGTTAGTGCTACACAT
CAAGTATTTTTACCAGCTTACGCTGCGTGGACTACAGAACTTGGAAATTTACAGTCTCATCTTATACTTA
CACTACTGAACAAGATTGAAAAACTTCTCAGGGAAGGAGAACATGGACTGGATGAACACAAACTCCACAT
GTATCTTTCTGCCTTGCAGTCCTTGATCCCATCTCTCTTTGCATTAGTGCTACAGAATGCACCTTTCTCC
AGCAAAGCCAAGCTTCATGGTGAAGTGCCACAGATAGAAGTGACTAGGTTTCCTCGGCCTATGTCGCCTC
TTCAAGATGTGTCCACTATTATCGGAAGTCGTGAGCAATTGGCAGTGCTGCTGCAACTTTATGACTACCA
GCTAGAACAAGAGGGTACAACAGGCTGGGAGAGTTTACTGTGGGTTGTCAATCAATTGTTGCCACAACTT
ATAGAAATAGTTGGCAAAATTAATGTTACTTCAACTGCCTGTGTCCATGAATTCTCCAGATTTTTCTGGC
GCCTTTGCCGGACATTTGGCAAAATTTTTACAAACACTAAGGTAAAACCTCAGTTCCAGGAGATTTTAAG
ACTATCTGAAGAAAACATTGATTCCTCAGCAGGAAATGGGGTCCTCACTAAAGCTACAGTCCCCATTTAT
GCAACAGGAGTCCTTACGTGTTATATTCAGGAAGAAGACCGAAAACTGTTAGTTGGATTCTTAGAAGATG
TAATGACGCTGCTTTCATTATCTCATGCTCCTCTTGATAGCCTGAAGGCTTCTTTTGTGGAATTGGGTGC
AAACCCAGCCTACCATGAGTTACTATTAACTGTTTTGTGGTATGGTGTTGTCCATACTTCAGCACTCGTG
AGGTGTACTGCTGCTAGAATGTTTGAGCTGACTCTTCGAGGCATGAGTGAAGCGTTAGTTGACAAGCGGG
TTGCTCCGGCCCTTGTTACCTTGTCCAGTGATCCTGAATTCTCTGTCAGGATTGCCACAATTCCAGCCTT
TGGCACTATTATGGAAACAGTAATTCAAAGAGAGTTGCTGGAAAGAGTGAAAATGCAGTTGGCTTCTTTC
CTGGAAGATCCTCAGTATCAAGACCAACATTCTTTGCATACAGAGATCATAAAAACATTTGGTAGAGTTG
GCCCTAACGCAGAACCCAGGTTCCGAGATGAGTTTGTTATACCACATTTGCATAAGTTAGCCTTGGTGAA
CAACTTACAGATTGTGGATTCTAAAAGACTGGACATTGCTACGCATCTTTTTGAAGCCTACAGTGCACTT
TCCTGTTGTTTCATTTCAGAGGATTTAATGGTTAATCACTTTTTACCTGGTCTCAGATGTTTACGGACTG
ACATGGAACATCTCTCTCCAGAGCATGAGGTTATTTTAAGTTCCATGATAAAAGAATGTGAACAAAAAGT
TGAAAACAAGACCGTCCAAGAGCCTCAAGGCTCAATGTCAATTGCTGCAAGCTTAGTGAGTGAAGATACA
AAGACCAAGTTTTTGAACAAAATGGGCCAGTTGACAACATCAGGTGCCATGTTGGCCAATGTATTTCAGA
GAAAGAAGTAG

Translation (1216 aa):
MAAMAPGGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVALGSSARPG
LPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQ
SGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGSISTLDSLDFARYSDDGNRETDEKVAVLEFE
LRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFS
DENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPIISNLPPTLETP
QPAENSMLVQKLEDKISLLNSEKWSLMEQIRRLKSEMDFLKNEHFAIPAVCDSVQPPLDQLPHKDSEDSG
QHPDVNSSDKGKNTDIHLSISDEADSTIPKENSPNSFPRREREGMPPSSLSSKKTVHFDKPNRKLSPAFH
QALLSFCRMSADSRLGYEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERD
QLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPY
LPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYHQGFELLLSALGDPSERVVSATH
QVFLPAYAAWTTELGNLQSHLILTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFS
SKAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEQEGTTGWESLLWVVNQLLPQL
IEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIY
ATGVLTCYIQEEDRKLLVGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALV
RCTAARMFELTLRGMSEALVDKRVAPALVTLSSDPEFSVRIATIPAFGTIMETVIQRELLERVKMQLASF
LEDPQYQDQHSLHTEIIKTFGRVGPNAEPRFRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSAL
SCCFISEDLMVNHFLPGLRCLRTDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDT
KTKFLNKMGQLTTSGAMLANVFQRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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