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Report for CCDS11983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11983.1 Public Homo sapiens 18 VPS4B 24 110 108 CCDS HistoryNCBI Gene:9525Re-query CCDS DB by CCDS ID:11983.1Re-query CCDS DB by GeneID:9525See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11983.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238497.10 ENSP00000238497.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238497.10Link to Ensembl Protein Viewer:ENSP00000238497.4Re-query CCDS DB by Nucleotide ID:ENST00000238497Re-query CCDS DB by Protein ID:ENSP00000238497
Original member Current member NCBI NM_004869.4 NP_004860.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004869.4Link to Protein Sequence:NP_004860.2Re-query CCDS DB by Nucleotide ID:NM_004869Re-query CCDS DB by Protein ID:NP_004860Link to BLAST:NP_004860.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004860.2 444 O75351 444 100% 0 0

Chromosomal Locations for CCDS 11983.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 63390975 63391076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63393409 63393549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63397034 63397253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63399242 63399323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63400048 63400196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63400547 63400703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63403707 63403826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63407432 63407499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63410290 63410446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63411467 63411578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63422233 63422259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGTCATCCACTTCGCCCAACCTCCAGAAAGCGATAGATCTGGCTAGCAAAGCAGCGCAAGAAGACAAGG
CTGGGAACTACGAAGAAGCCCTTCAGCTCTATCAGCATGCTGTGCAGTATTTTCTTCATGTCGTTAAATA
TGAAGCACAGGGTGATAAAGCCAAGCAAAGTATCAGGGCAAAGTGTACAGAATATCTTGATAGAGCAGAA
AAACTAAAGGAGTACCTGAAAAATAAAGAGAAAAAAGCACAGAAGCCAGTGAAAGAAGGACAGCCGAGTC
CAGCAGATGAGAAGGGGAATGACAGTGATGGGGAAGGAGAATCTGATGATCCTGAAAAAAAGAAACTACA
GAATCAACTTCAAGGTGCCATTGTTATAGAACGACCAAATGTGAAATGGAGTGACGTTGCTGGACTTGAA
GGAGCCAAAGAAGCACTGAAAGAGGCTGTGATACTGCCTATTAAATTTCCTCATCTTTTTACAGGCAAGA
GAACACCTTGGAGGGGAATCCTATTATTTGGGCCGCCTGGAACAGGAAAGTCCTACTTAGCCAAAGCTGT
AGCAACAGAAGCCAACAACTCAACATTTTTTTCAATATCTTCCTCTGATCTTGTTTCTAAGTGGCTAGGT
GAAAGTGAAAAACTGGTTAAGAATTTATTCCAACTTGCCAGAGAGAACAAGCCCTCCATTATCTTCATTG
ATGAAATTGATTCTCTCTGTGGTTCAAGAAGTGAAAATGAAAGTGAAGCCGCACGTAGAATTAAGACGGA
GTTCCTAGTGCAAATGCAAGGGGTTGGTGTAGACAATGATGGAATTTTGGTTCTGGGAGCTACAAATATA
CCCTGGGTTCTGGATTCTGCCATTAGGCGAAGATTTGAGAAACGAATTTATATTCCCTTGCCGGAACCCC
ATGCCCGAGCAGCAATGTTTAAACTGCACCTAGGGACCACTCAGAACAGTCTCACGGAAGCAGACTTTCG
GGAACTTGGGAGGAAAACAGATGGTTATTCAGGGGCAGATATAAGTATCATTGTACGTGATGCCCTTATG
CAGCCTGTTAGGAAAGTACAGTCAGCTACTCATTTTAAAAAGGTTCGCGGACCTTCCCGAGCTGATCCTA
ACCATCTTGTAGATGATCTGCTAACACCTTGCTCTCCAGGTGACCCTGGTGCCATTGAAATGACATGGAT
GGATGTCCCTGGAGATAAACTTTTGGAGCCAGTTGTTTCCATGTCGGATATGTTGCGGTCACTATCTAAC
ACAAAACCTACAGTCAATGAACATGACTTGTTGAAATTAAAGAAGTTTACAGAAGATTTTGGTCAAGAAG
GCTAA

Translation (444 aa):
MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAE
KLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLE
GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG
ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI
PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALM
QPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSN
TKPTVNEHDLLKLKKFTEDFGQEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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