NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12022.1 Public Homo sapiens 18 PARD6G 24 110 108 CCDS HistoryNCBI Gene:84552Re-query CCDS DB by CCDS ID:12022.1Re-query CCDS DB by GeneID:84552See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12022.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353265.8 ENSP00000343144.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000353265.8Link to Ensembl Protein Viewer:ENSP00000343144.3Re-query CCDS DB by Nucleotide ID:ENST00000353265Re-query CCDS DB by Protein ID:ENSP00000343144
Original member Current member NCBI NM_032510.4 NP_115899.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032510.4Link to Protein Sequence:NP_115899.1Re-query CCDS DB by Nucleotide ID:NM_032510Re-query CCDS DB by Protein ID:NP_115899Link to BLAST:NP_115899.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115899.1 376 Q9BYG4-1 376 100% 0 0

Chromosomal Locations for CCDS 12022.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80159771 80160606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80202710 80202932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80247277 80247348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGAACCGAAGTTTTCACAAGTCTCAGACCTTGCGATTCTACGATTGCAGCGCAGTGGAAGTCAAGAGCA
AGTTTGGGGCGGAATTCCGAAGGTTCTCTCTGGACCGTCATAAGCCTGGGAAGTTTGAAGATTTCTACAA
GCTGGTTGTGCACACCCACCATATCTCCAACAGTGATGTAACTATTGGCTATGCAGATGTGCACGGAGAC
CTGCTGCCCATCAACAATGATGACAACTTCTGCAAGGCGGTTTCTAGTGCAAATCCCCTGCTCAGGGTCT
TCATCCAGAAACGAGAGGAGGCCGAGCGTGGCAGCCTCGGCGCGGGCTCGCTGTGCAGGCGGAGGCGGGC
GCTGGGCGCGCTGCGTGATGAAGGACCCCGGCGGCGTGCACACCTGGACATCGGCCTCCCGCGCGACTTC
CGCCCCGTATCATCCATCATCGATGTGGACCTGGTCCCCGAGACGCACCGGCGAGTGCGGCTGCACCGGC
ACGGCTGCGAGAAGCCGCTGGGCTTCTACATCCGCGATGGCGCCAGCGTGCGCGTGACCCCGCACGGGCT
GGAGAAGGTGCCCGGCATCTTCATCTCGCGCATGGTACCCGGGGGCCTGGCGGAGAGCACCGGGCTGCTG
GCTGTGAATGACGAGGTCCTGGAGGTGAACGGCATTGAGGTGGCCGGGAAGACGCTGGACCAGGTCACGG
ACATGATGATCGCCAACAGCCACAACCTCATCGTCACCGTCAAGCCCGCCAACCAGCGCAACAACGTGGT
GCGCGGCGGCCGCGCGTTGGGCAGCTCGGGACCGCCCTCGGACGGCACCGCGGGCTTCGTGGGTCCCCCC
GCCCCGCGCGTCCTGCAGAACTTCCACCCCGACGAGGCGGAGAGCGATGAGGACAACGACGTCGTCATCG
AGGGCACACTGGAGCCTGCACGTCCCCCCCAGACCCCGGGCGCGCCCGCAGGCAGCCTCTCCCGGGTCAA
TGGCGCGGGCCTGGCGCAGCGGCTGCAGCGGGACCTGGCCCTGGACGGCGGCCTCCAGCGGCTGCTCAGC
TCCCTGCGGGCCGACCCCCGTCACAGCCTGGCGCTGCCGCCAGGCGGCGTGGAGGAGCACGGGCCCGCGG
TCACGCTCTAG

Translation (376 aa):
MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDVTIGYADVHGD
LLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLGAGSLCRRRRALGALRDEGPRRRAHLDIGLPRDF
RPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGASVRVTPHGLEKVPGIFISRMVPGGLAESTGLL
AVNDEVLEVNGIEVAGKTLDQVTDMMIANSHNLIVTVKPANQRNNVVRGGRALGSSGPPSDGTAGFVGPP
APRVLQNFHPDEAESDEDNDVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLS
SLRADPRHSLALPPGGVEEHGPAVTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH