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Report for CCDS12056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12056.1 Public Homo sapiens 19 POLR2E 24 110 108 CCDS HistoryNCBI Gene:5434Re-query CCDS DB by CCDS ID:12056.1Re-query CCDS DB by GeneID:5434See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12056.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000586746.5 ENSP00000464739.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586746.5Link to Ensembl Protein Viewer:ENSP00000464739.1Re-query CCDS DB by Nucleotide ID:ENST00000586746Re-query CCDS DB by Protein ID:ENSP00000464739
Original member Current member EBI ENST00000615234.5 ENSP00000478303.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000615234.5Link to Ensembl Protein Viewer:ENSP00000478303.1Re-query CCDS DB by Nucleotide ID:ENST00000615234Re-query CCDS DB by Protein ID:ENSP00000478303
Original member Current member EBI ENST00000612655.4 ENSP00000485021.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612655.4Link to Ensembl Protein Viewer:ENSP00000485021.1Re-query CCDS DB by Nucleotide ID:ENST00000612655Re-query CCDS DB by Protein ID:ENSP00000485021
Original member Current member NCBI NM_002695.5 NP_002686.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002695.5Link to Protein Sequence:NP_002686.3Re-query CCDS DB by Nucleotide ID:NM_002695Re-query CCDS DB by Protein ID:NP_002686Link to BLAST:NP_002686.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002686.3 210 P19388 210 100% 0 0

Chromosomal Locations for CCDS 12056.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1089486 1089551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1089884 1089962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1090087 1090145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1090908 1090988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1091792 1091907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1093904 1094078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1095259 1095315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGACGACGAGGAGGAGACGTACCGGCTCTGGAAAATCCGCAAGACCATCATGCAGCTGTGCCACGACC
GTGGCTATCTGGTGACCCAGGACGAGCTTGACCAGACCCTGGAGGAGTTCAAAGCCCAATCTGGGGACAA
GCCGAGTGAGGGGCGGCCGCGGCGCACGGACCTCACCGTGCTGGTGGCCCACAACGATGACCCCACCGAC
CAGATGTTTGTGTTCTTTCCAGAGGAGCCCAAGGTGGGCATCAAGACCATCAAGGTGTACTGCCAGCGCA
TGCAGGAGGAGAACATCACACGGGCTCTCATCGTGGTGCAGCAGGGCATGACACCCTCCGCCAAGCAGTC
CCTGGTCGACATGGCCCCCAAGTACATCCTGGAGCAGTTTCTGCAGCAGGAGCTGCTCATCAACATCACG
GAGCACGAGCTAGTCCCTGAGCACGTCGTCATGACCAAGGAGGAGGTGACAGAGCTGCTGGCCCGATATA
AGCTCCGAGAGAACCAGCTGCCCAGGATCCAGGCGGGGGACCCTGTGGCGCGCTACTTTGGGATAAAGCG
TGGGCAGGTGGTGAAGATCATCCGGCCCAGTGAGACGGCTGGCAGGTACATCACCTACCGGCTGGTGCAG
TAG

Translation (210 aa):
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTD
QMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINIT
EHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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