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Report for CCDS12057.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12057.2 Public Homo sapiens 19 CBARP 24 110 108 CCDS HistoryNCBI Gene:255057Re-query CCDS DB by CCDS ID:12057.2Re-query CCDS DB by GeneID:255057See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12057.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in primates.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12057.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000590083.5 ENSP00000465260.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000590083.5Link to Ensembl Protein Viewer:ENSP00000465260.1Re-query CCDS DB by Nucleotide ID:ENST00000590083Re-query CCDS DB by Protein ID:ENSP00000465260
Original member Current member NCBI NM_152769.3 NP_689982.3 Accepted alive Link to Nucleotide Sequence:NM_152769.3Link to Protein Sequence:NP_689982.3Re-query CCDS DB by Nucleotide ID:NM_152769Re-query CCDS DB by Protein ID:NP_689982Link to BLAST:NP_689982.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689982.3 453 Q8N350-4 453 100% 0 0

Chromosomal Locations for CCDS 12057.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1230893 1231275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1233426 1233636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1234191 1234331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1234571 1234742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1235001 1235145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1235501 1235565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1235779 1235918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1235996 1236100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGCAGCCCACAGCCACCATGGCCACAGCCGCCACCACCACCACCACCACCACTGCCACAGTAGCCCTGA
CGACGTCGTGGGACAATGCCACTGGACGCCCCACGGCAGAGCCAGACCCCATCCTGGACAACTACGTGCT
GCTGGTGGTGGTGATGTCGCTGTTCGTGGGGGGCACGCTGGTGGTGTTGTCTGGCGTCCTGCTCCTCTGC
AAGCGCTGCTGGGACGTCCACCAGCGCCTCAACAGGGCCATGGAGGAAGCGGAGAAGACCACCACCACCT
ACCTGGACAACGGCACCCACCCAGCCCAAGACCCCGACTTCCGGGGAGAGGACCCCGAGTGCCAGGATGC
GGAGACCGAACGCTTCCTGTCCACCAGCTCCACGGGCCGCCGGGTCTCCTTCAATGAGGCGGCGCTGTTT
GAGCAGAGCCGCAAGACGCAGGACAAGGGTCGCCGGTACACACTGACGGAGGGGGACTTCCACCACCTGA
AGAATGCCCGGCTCACGCACCTGCACCTGCCGCCCCTCAAGATTGTCACCATCCACGAGTGTGACTCAGG
CGAGGCCAGCTCAGCCACCACGCCCCACCCGGCCACCTCTCCCAAGGCCACTCTGGCCATCTTCCAGCCC
CCGGGGAAGGCCCTCACCGGCCGCTCTGTGGGCCCCAGCTCCGCCCTGCCAGGTGACCCCTACAACTCAG
CCGCGGGCGCCACTGACTTCGCAGAGATCAGCCCCTCGGCATCTAGCGACTCTGGGGAAGGCACCTCGTT
GGATGCCGGTACCAGGAGCACCAAGGCTGGAGGGCCCGGGGCTGCAGCAGGGCCTGGGGAGGCGGGCCCG
GGATCCGGGGCAGGTACCGTTCTGCAGTTCCTCACCCGCCTGCGCCGCCATGCCAGCCTGGATGGGGCCA
GCCCCTATTTCAAGGTCAAGAAGTGGAAGCTGGAGCCCAGCCAGCGGGCAGCCAGTCTGGACACGAGAGG
TTCCCCCAAGCGGCACCACTTCCAGCGGCAGCGGGCAGCCAGTGAGAGCACGGAGCAGGAGGAGGGGGAT
GCCCCCCAGGAGGACTTCATCCAGTACATTGCCCGGGCGGGCGACGCCGTGGCCTTCCCGCACCCCCGCC
CCTTTCTGGCCAGCCCGCCCCCTGCTCTCGGCAGGTATTTTTCAGTAGATGGAGGTGCTAGGGGTGGACC
TGTGGGCCCTTGCCCCCCTTCGCCCCCCCCTAGGCGGCCCAGGGAGCGCTCTCCAGGCCCCGTGGACACG
CGCTCGCCTGCCTCCAGCGGCAAGGCCCCTCCCAGAGGCGGACTCACTGGGGCCACCTCTCCAGCATGGA
CCAGAGGAGGGAAGCAGGGAGAGACTGGGTAA

Translation (453 aa):
MQPTATMATAATTTTTTTATVALTTSWDNATGRPTAEPDPILDNYVLLVVVMSLFVGGTLVVLSGVLLLC
KRCWDVHQRLNRAMEEAEKTTTTYLDNGTHPAQDPDFRGEDPECQDAETERFLSTSSTGRRVSFNEAALF
EQSRKTQDKGRRYTLTEGDFHHLKNARLTHLHLPPLKIVTIHECDSGEASSATTPHPATSPKATLAIFQP
PGKALTGRSVGPSSALPGDPYNSAAGATDFAEISPSASSDSGEGTSLDAGTRSTKAGGPGAAAGPGEAGP
GSGAGTVLQFLTRLRRHASLDGASPYFKVKKWKLEPSQRAASLDTRGSPKRHHFQRQRAASESTEQEEGD
APQEDFIQYIARAGDAVAFPHPRPFLASPPPALGRYFSVDGGARGGPVGPCPPSPPPRRPRERSPGPVDT
RSPASSGKAPPRGGLTGATSPAWTRGGKQGETG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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