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Report for CCDS12084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12084.1 Public Homo sapiens 19 SF3A2 24 110 108 CCDS HistoryNCBI Gene:8175Re-query CCDS DB by CCDS ID:12084.1Re-query CCDS DB by GeneID:8175See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12084.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221494.10 ENSP00000221494.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221494.10Link to Ensembl Protein Viewer:ENSP00000221494.3Re-query CCDS DB by Nucleotide ID:ENST00000221494Re-query CCDS DB by Protein ID:ENSP00000221494
Original member Current member NCBI NM_007165.5 NP_009096.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007165.5Link to Protein Sequence:NP_009096.2Re-query CCDS DB by Nucleotide ID:NM_007165Re-query CCDS DB by Protein ID:NP_009096Link to BLAST:NP_009096.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009096.2 464 Q15428 464 100% 0 0

Chromosomal Locations for CCDS 12084.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 2243419 2243544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2244544 2244615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2244733 2244779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2245446 2245555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2246753 2246802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2246882 2247022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2247594 2247662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2247767 2248546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGACTTCCAGCATCGCCCCGGGGGCAAGACCGGGAGCGGGGGCGTGGCCTCCTCCTCCGAGAGCAACC
GTGACCGCAGGGAGCGCCTCCGGCAGCTGGCCCTGGAGACCATCGACATCAACAAGGACCCGTACTTCAT
GAAGAACCACCTGGGCTCCTATGAATGCAAACTCTGCCTGACACTTCACAACAATGAGGGGAGCTACCTG
GCACATACGCAGGGGAAGAAGCACCAGACCAACCTGGCCCGGCGAGCAGCCAAGGAGGCCAAGGAGGCCC
CTGCCCAGCCCGCGCCTGAGAAGGTCAAGGTGGAGGTGAAGAAGTTTGTGAAGATCGGCCGCCCGGGCTA
CAAAGTGACCAAGCAGAGAGACTCGGAGATGGGCCAGCAGAGCCTCCTCTTCCAGATTGACTACCCTGAG
ATCGCCGAGGGCATCATGCCACGTCACCGCTTCATGTCTGCGTACGAGCAGAGGATCGAGCCTCCGGACC
GGCGCTGGCAGTACCTGCTCATGGCCGCCGAGCCCTACGAGACCATTGCCTTCAAGGTGCCGAGCAGAGA
GATCGACAAGGCGGAGGGCAAGTTCTGGACACACTGGAACCGGGAGACCAAGCAGTTCTTCCTCCAGTTC
CACTTTAAGATGGAGAAGCCCCCGGCTCCACCCAGCCTCCCTGCTGGCCCCCCTGGGGTGAAGCGGCCTC
CACCCCCGCTGATGAACGGTCTGCCCCCTCGGCCACCGCTGCCTGAGTCTTTGCCACCGCCCCCGCCAGG
AGGCCTGCCTCTGCCACCCATGCCCCCCACAGGGCCTGCGCCCTCAGGGCCCCCGGGACCACCCCAGCTA
CCCCCGCCAGCTCCAGGGGTCCACCCCCCGGCCCCAGTGGTGCATCCCCCTGCATCTGGGGTCCATCCCC
CAGCTCCTGGCGTCCACCCCCCAGCTCCTGGCGTCCATCCCCCAGCCCCTGGGGTCCACCCACCAACCTC
TGGGGTCCACCCCCCAGCTCCTGGAGTCCACCCTCCAGCCCCCGGGGTTCACCCACCAGCCCCCGGAGTC
CACCCACCAGCCCCTGGGGTTCACCCACCAGCCCCAGGGGTCCATCCTCCCCCATCAGCGGGGGTTCACC
CCCAGGCCCCGGGGGTGCACCCAGCAGCCCCCGCCGTTCACCCTCAGGCCCCAGGGGTGCACCCACCAGC
CCCAGGGATGCACCCTCAGGCCCCGGGGGTCCACCCCCAACCTCCCGGGGTCCATCCGTCGGCTCCTGGG
GTCCACCCTCAGCCTCCGGGAGTTCACCCCTCAAATCCTGGGGTGCACCCCCCAACTCCCATGCCCCCAA
TGCTGAGGCCCCCACTTCCCTCCGAAGGCCCAGGGAACATACCTCCCCCTCCCCCAACCAACTGA

Translation (464 aa):
MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYL
AHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPE
IAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQF
HFKMEKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQL
PPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGV
HPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPG
VHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPPPPTN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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