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Report for CCDS12098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12098.1 Public Homo sapiens 19 ZNF57 24 110 108 CCDS HistoryNCBI Gene:126295Re-query CCDS DB by CCDS ID:12098.1Re-query CCDS DB by GeneID:126295See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12098.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306908.10 ENSP00000303696.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306908.10Link to Ensembl Protein Viewer:ENSP00000303696.5Re-query CCDS DB by Nucleotide ID:ENST00000306908Re-query CCDS DB by Protein ID:ENSP00000303696
Original member Current member NCBI NM_173480.3 NP_775751.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173480.3Link to Protein Sequence:NP_775751.1Re-query CCDS DB by Nucleotide ID:NM_173480Re-query CCDS DB by Protein ID:NP_775751Link to BLAST:NP_775751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775751.1 555 Q68EA5 555 100% 0 0

Chromosomal Locations for CCDS 12098.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 2901046 2901048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2915522 2915648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2916078 2916249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2916924 2918289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGACTCAGTGGTCTTTGAGGATGTGGCTGTGGACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTG
CTCAGAGGGACCTCTACAGAGATGTGATGCTGGAGACCTTCCGGAACCTGGCCTCAGTAGATGATGGGAC
TCAATTTAAAGCCAATGGGTCAGTTTCTCTGCAGGATATGTACGGGCAAGAAAAATCTAAGGAACAGACA
ATACCAAACTTCACAGGAAATAATTCCTGTGCCTACACTTTAGAAAAAAATTGTGAAGGCTATGGCACTG
AAGACCACCACAAAAATCTGAGAAATCATATGGTGGACAGATTCTGTACACATAATGAAGGTAATCAATA
TGGAGAAGCCATCCATCAAATGCCAGATCTTACCCTGCACAAGAAAGTTTCTGCTGGAGAAAAACCATAT
GAATGCACCAAGTGCAGGACAGTCTTCACGCATCTTTCTTCTCTTAAAAGGCACGTCAAGTCTCACTGTG
GACGAAAAGCACCTCCAGGTGAGGAATGTAAGCAGGCCTGCATTTGTCCCTCACACCTACACAGTCACGG
AAGAACTGACACTGAGGAGAAGCCGTATAAGTGTCAAGCATGTGGGCAAACTTTCCAACATCCTCGTTAC
CTCTCCCACCACGTAAAGACTCACACAGCAGAGAAAACCTACAAATGCGAGCAGTGTCGGATGGCGTTTA
ATGGGTTCGCAAGCTTCACTAGACATGTGAGAACTCACACAAAAGACAGGCCATATAAATGTCAGGAATG
TGGGAGAGCCTTCATTTATCCCTCGACATTTCAAAGACACATGACAACACACACTGGAGAGAAGCCCTAT
AAATGTCAGCACTGTGGGAAAGCCTTCACTTACCCCCAGGCTTTTCAAAGACATGAGAAGACGCACACGG
GAGAGAAGCCCTATGAATGCAAGCAGTGTGGGAAAACATTCAGTTGGTCTGAAACCTTGCGAGTCCACAT
GAGGATCCACACTGGGGACAAACTCTATAAATGTGAACACTGTGGGAAGGCTTTTACCTCTTCCAGATCA
TTCCAAGGTCATTTGAGGACGCACACTGGAGAGAAACCTTATGAGTGTAAACAATGTGGGAAAGCCTTCA
CTTGGTCCTCAACGTTTAGAGAACATGTGAGAATTCACACGCAAGAGCAGCTCTATAAATGTGAACAATG
TGGGAAGGCTTTTACCTCTTCCAGATCATTCCGAGGTCATTTGAGGACGCACACTGGAGAGAAGCCTTAT
GAGTGTAAACAATGTGGAAAAACCTTCACTTGGTCCTCAACGTTTAGAGAACATGTGAGAATTCACACGC
AAGAGCAGCTCCATAAATGTGAACACTGTGGGAAGGCCTTTACCTCTTCCAGAGCATTCCAAGGTCATTT
GAGGATGCACACTGGAGAGAAGCCTTATGAGTGTAAACAATGTGGAAAAACCTTCACTTGGTCCTCAACC
TTACATAATCATGTGAGGATGCACACTGGAGAGAAACCTCACAAATGTAAACAATGTGGGATGTCCTTCA
AGTGGCACTCCTCCTTCCGGAACCATCTGAGGATGCACACAGGACAGAAATCCCACGAATGTCAGTCATA
CTCAAAAGCCTTCAGTTGCCAAGTCATTCTTTCTAAAACCAGTGAGAGCACACACTAA

Translation (555 aa):
MDSVVFEDVAVDFTLEEWALLDSAQRDLYRDVMLETFRNLASVDDGTQFKANGSVSLQDMYGQEKSKEQT
IPNFTGNNSCAYTLEKNCEGYGTEDHHKNLRNHMVDRFCTHNEGNQYGEAIHQMPDLTLHKKVSAGEKPY
ECTKCRTVFTHLSSLKRHVKSHCGRKAPPGEECKQACICPSHLHSHGRTDTEEKPYKCQACGQTFQHPRY
LSHHVKTHTAEKTYKCEQCRMAFNGFASFTRHVRTHTKDRPYKCQECGRAFIYPSTFQRHMTTHTGEKPY
KCQHCGKAFTYPQAFQRHEKTHTGEKPYECKQCGKTFSWSETLRVHMRIHTGDKLYKCEHCGKAFTSSRS
FQGHLRTHTGEKPYECKQCGKAFTWSSTFREHVRIHTQEQLYKCEQCGKAFTSSRSFRGHLRTHTGEKPY
ECKQCGKTFTWSSTFREHVRIHTQEQLHKCEHCGKAFTSSRAFQGHLRMHTGEKPYECKQCGKTFTWSST
LHNHVRMHTGEKPHKCKQCGMSFKWHSSFRNHLRMHTGQKSHECQSYSKAFSCQVILSKTSESTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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