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Report for CCDS12116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12116.1 Public Homo sapiens 19 DAPK3 24 110 108 CCDS HistoryNCBI Gene:1613Re-query CCDS DB by CCDS ID:12116.1Re-query CCDS DB by GeneID:1613See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12116.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301264.7 ENSP00000301264.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301264.7Link to Ensembl Protein Viewer:ENSP00000301264.3Re-query CCDS DB by Nucleotide ID:ENST00000301264Re-query CCDS DB by Protein ID:ENSP00000301264
Original member Current member EBI ENST00000545797.7 ENSP00000442973.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000545797.7Link to Ensembl Protein Viewer:ENSP00000442973.1Re-query CCDS DB by Nucleotide ID:ENST00000545797Re-query CCDS DB by Protein ID:ENSP00000442973
Original member Current member NCBI NM_001348.3 NP_001339.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001348.3Link to Protein Sequence:NP_001339.1Re-query CCDS DB by Nucleotide ID:NM_001348Re-query CCDS DB by Protein ID:NP_001339Link to BLAST:NP_001339.1
Original member Current member NCBI NM_001375658.1 NP_001362587.1 Accepted alive Link to Nucleotide Sequence:NM_001375658.1Link to Protein Sequence:NP_001362587.1Re-query CCDS DB by Nucleotide ID:NM_001375658Re-query CCDS DB by Protein ID:NP_001362587Link to BLAST:NP_001362587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339.1 454 O43293-1 454 100% 0 0
NP_001362587.1 454 O43293-1 454 100% 0 0

Chromosomal Locations for CCDS 12116.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3959101 3959637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3960059 3960104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3961009 3961161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3963643 3963669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3963871 3963919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3964244 3964373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3964631 3964991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3969674 3969735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGTCCACGTTCAGGCAGGAGGACGTGGAGGACCATTATGAGATGGGGGAGGAGCTGGGCAGCGGCCAGT
TTGCGATCGTGCGGAAGTGCCGGCAGAAGGGCACGGGCAAGGAGTACGCAGCCAAGTTCATCAAGAAGCG
CCGCCTGTCATCCAGCCGGCGTGGGGTGAGCCGGGAGGAGATCGAGCGGGAGGTGAACATCCTGCGGGAG
ATCCGGCACCCCAACATCATCACCCTGCACGACATCTTCGAGAACAAGACGGACGTGGTCCTCATCCTGG
AGCTGGTCTCTGGCGGGGAGCTCTTTGACTTCCTGGCGGAGAAGGAGTCGCTGACGGAGGACGAGGCCAC
CCAGTTCCTCAAGCAGATCCTGGACGGCGTTCACTACCTGCACTCTAAGCGCATCGCACACTTTGACCTG
AAGCCGGAAAACATCATGCTGCTGGACAAGAACGTGCCCAACCCACGAATCAAGCTCATCGACTTCGGCA
TCGCGCACAAGATCGAGGCGGGGAACGAGTTCAAGAACATCTTCGGCACCCCGGAGTTTGTGGCCCCAGA
GATTGTGAACTATGAGCCGCTGGGCCTGGAGGCGGACATGTGGAGCATCGGTGTCATCACCTATATCCTC
CTGAGCGGTGCATCCCCGTTCCTGGGCGAGACCAAGCAGGAGACGCTCACCAACATCTCAGCCGTGAACT
ACGACTTCGACGAGGAGTACTTCAGCAACACCAGCGAGCTGGCCAAGGACTTCATTCGCCGGCTGCTCGT
CAAAGATCCCAAGCGGAGAATGACCATTGCCCAGAGCCTGGAACATTCCTGGATTAAGGCGATCCGGCGG
CGGAACGTGCGTGGTGAGGACAGCGGCCGCAAGCCCGAGCGGCGGCGCCTGAAGACCACGCGTCTGAAGG
AGTACACCATCAAGTCGCACTCCAGCTTGCCGCCCAACAACAGCTACGCCGACTTCGAGCGCTTCTCCAA
GGTGCTGGAGGAGGCGGCGGCCGCCGAGGAGGGCCTGCGCGAGCTGCAGCGCAGCCGGCGGCTCTGCCAC
GAGGACGTGGAGGCGCTGGCCGCCATCTACGAGGAGAAGGAGGCCTGGTACCGCGAGGAGAGCGACAGCC
TGGGCCAGGACCTGCGGAGGCTACGGCAGGAGCTGCTCAAGACCGAGGCGCTCAAGCGGCAGGCGCAGGA
GGAGGCCAAGGGCGCGCTGCTGGGGACCAGCGGCCTCAAGCGCCGCTTCAGCCGCCTGGAGAACCGCTAC
GAGGCGCTGGCCAAGCAAGTAGCCTCCGAGATGCGCTTCGTGCAGGACCTCGTGCGCGCCCTGGAGCAGG
AGAAGCTGCAGGGCGTGGAGTGCGGGCTGCGCTAG

Translation (454 aa):
MSTFRQEDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILRE
IRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDL
KPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL
LSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR
RNVRGEDSGRKPERRRLKTTRLKEYTIKSHSSLPPNNSYADFERFSKVLEEAAAAEEGLRELQRSRRLCH
EDVEALAAIYEEKEAWYREESDSLGQDLRRLRQELLKTEALKRQAQEEAKGALLGTSGLKRRFSRLENRY
EALAKQVASEMRFVQDLVRALEQEKLQGVECGLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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