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Report for CCDS12178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12178.1 Public Homo sapiens 19 PEX11G 24 110 108 CCDS HistoryNCBI Gene:92960Re-query CCDS DB by CCDS ID:12178.1Re-query CCDS DB by GeneID:92960See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221480.6 ENSP00000221480.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221480.6Link to Ensembl Protein Viewer:ENSP00000221480.1Re-query CCDS DB by Nucleotide ID:ENST00000221480Re-query CCDS DB by Protein ID:ENSP00000221480
Original member Current member NCBI NM_080662.4 NP_542393.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080662.4Link to Protein Sequence:NP_542393.1Re-query CCDS DB by Nucleotide ID:NM_080662Re-query CCDS DB by Protein ID:NP_542393Link to BLAST:NP_542393.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542393.1 241 Q96HA9-1 241 100% 0 0

Chromosomal Locations for CCDS 12178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7477202 7477436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7478314 7478376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7482033 7482211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7485838 7486026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7488951 7489010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGCGTCGCTGAGCGGCCTGGCGTCGGCGCTGGAGTCGTACAGGGGCCGGGACCGCCTGATCCGAGTGC
TGGGGTACTGCTGCCAGCTGGTTGGTGGAGTTCTGGTTGAACAGTGTCCCGCCAGGTCCGAAGTGGGGAC
ACGTCTGTTGGTGGTGTCCACCCAACTCAGCCACTGCAGGACCATCTTGCGACTCTTTGATGACCTGGCC
ATGTTTGTCTACACTAAGCAATATGGCCTGGGGGCACAGGAGGAGGACGCCTTTGTCCGCTGTGTCTCCG
TCCTAGGGAACCTGGCTGACCAGCTCTACTACCCCTGTGAGCACGTGGCCTGGGCGGCTGATGCCCGGGT
CCTCCACGTGGACTCTTCTCGGTGGTGGACGCTGAGTACAACCCTGTGGGCCCTCTCTCTGCTCCTGGGG
GTTGCCAGGTCCCTGTGGATGCTGCTGAAACTGAGACAGAGGCTGCGGAGCCCCACGGCGCCCTTCACCA
GCCCGCTGCCCCGGGGCAAGCGGAGGGCCATGGAGGCGCAGATGCAGTCGGAGGCGCTGTCACTTCTCAG
CAACCTGGCCGACCTGGCCAACGCCGTGCACTGGCTGCCCCGGGGCGTGCTGTGGGCCGGCCGCTTCCCG
CCGTGGCTAGTGGGCCTCATGGGCACCATCTCCTCAATCCTCAGCATGTACCAGGCGGCCCGGGCCGGCG
GCCAGGCCGAGGCCACTACCCCCTGA

Translation (241 aa):
MASLSGLASALESYRGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCRTILRLFDDLA
MFVYTKQYGLGAQEEDAFVRCVSVLGNLADQLYYPCEHVAWAADARVLHVDSSRWWTLSTTLWALSLLLG
VARSLWMLLKLRQRLRSPTAPFTSPLPRGKRRAMEAQMQSEALSLLSNLADLANAVHWLPRGVLWAGRFP
PWLVGLMGTISSILSMYQAARAGGQAEATTP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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