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Report for CCDS12181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12181.1 Public Homo sapiens 19 STXBP2 24 110 108 CCDS HistoryNCBI Gene:6813Re-query CCDS DB by CCDS ID:12181.1Re-query CCDS DB by GeneID:6813See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12181.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221283.10 ENSP00000221283.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221283.10Link to Ensembl Protein Viewer:ENSP00000221283.4Re-query CCDS DB by Nucleotide ID:ENST00000221283Re-query CCDS DB by Protein ID:ENSP00000221283
Original member Current member NCBI NM_006949.4 NP_008880.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006949.4Link to Protein Sequence:NP_008880.2Re-query CCDS DB by Nucleotide ID:NM_006949Re-query CCDS DB by Protein ID:NP_008880Link to BLAST:NP_008880.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008880.2 593 Q15833-1 593 100% 0 0

Chromosomal Locations for CCDS 12181.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7637150 7637186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7638726 7638775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7639019 7639100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7639731 7639807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7640731 7640809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7640900 7641003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7641705 7641853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7642034 7642118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7642203 7642333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7642429 7642536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7642766 7642823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7642983 7643048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7643165 7643245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7644614 7644752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7645197 7645306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7646249 7646344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7647162 7647247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7647354 7647511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7647725 7647810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGCGCCCTCGGGGCTGAAGGCGGTGGTGGGGGAAAAAATTCTGAGCGGAGTTATTCGGAGTGTCAAGA
AGGATGGGGAGTGGAAGGTGCTTATCATGGATCACCCAAGCATGCGCATCTTGTCTTCCTGCTGCAAAAT
GTCAGATATCCTGGCTGAGGGCATCACCATTGTTGAAGACATCAACAAACGGCGGGAACCCATTCCCAGT
CTGGAGGCCATTTATTTGCTGAGCCCCACGGAGAAGTCGGTTCAGGCCCTGATCAAAGACTTCCAGGGGA
CCCCGACTTTCACCTACAAAGCGGCCCATATCTTCTTCACCGACACCTGCCCCGAGCCCCTGTTCAGTGA
GCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGAAGACGTTGAAGGAGATTCACCTTGCCTTCCTCCCCTAC
GAGGCCCAGGTGTTCTCCCTCGATGCTCCCCACAGCACCTACAACCTCTACTGCCCCTTCCGGGCAGAGG
AGCGCACGCGGCAGCTCGAGGTGCTGGCCCAGCAGATTGCCACGCTGTGCGCCACCCTGCAGGAGTACCC
GGCCATCCGCTACCGCAAGGGCCCAGAGGACACAGCCCAGTTGGCCCACGCCGTCCTGGCCAAGCTGAAC
GCCTTCAAGGCAGACACTCCCAGTCTGGGCGAGGGCCCAGAGAAAACCCGCTCCCAGCTGCTGATAATGG
ACCGGGCAGCTGACCCCGTGTCCCCACTACTGCATGAGCTCACGTTCCAGGCCATGGCGTATGATCTGCT
GGACATAGAGCAGGACACATACAGGTATGAGACCACCGGGCTGAGCGAGGCGCGGGAGAAGGCCGTCTTG
CTGGACGAGGACGATGACTTGTGGGTGGAGCTTCGCCACATGCATATCGCAGATGTGTCCAAGAAGGTCA
CGGAGCTCCTGAGGACCTTCTGTGAGAGCAAGAGGCTGACCACGGACAAGGCGAACATCAAAGACCTATC
CCAGATCCTGAAAAAGATGCCGCAGTACCAGAAGGAGCTGAATAAGTATTCTACGCACCTGCATCTAGCA
GATGATTGTATGAAGCACTTCAAGGGCTCGGTGGAGAAGCTGTGTAGTGTGGAGCAGGACCTGGCCATGG
GCTCCGACGCAGAGGGGGAGAAGATCAAGGACTCCATGAAGCTGATCGTTCCGGTGCTGCTGGACGCGGC
GGTGCCCGCCTACGACAAGATCCGGGTCCTGCTGCTCTACATCCTCCTTCGGAATGGTGTGAGTGAGGAG
AACCTGGCCAAGCTGATCCAGCATGCCAATGTACAGGCGCACAGCAGCCTCATCCGTAACCTGGAGCAGC
TGGGAGGCACTGTCACCAACCCCGGGGGCTCGGGGACCTCCAGCCGGCTGGAGCCGAGAGAACGCATGGA
GCCCACCTATCAGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAGGACGCCGTGGAGGACCGG
CTGGACAGGAACCTGTGGCCCTTCGTATCCGACCCCGCCCCCACGGCCAGCTCCCAGGCCGCTGTCAGTG
CCCGCTTCGGTCACTGGCACAAGAACAAGGCTGGCATAGAAGCCCGGGCGGGCCCCCGGCTCATCGTGTA
TGTCATGGGCGGTGTGGCCATGTCAGAGATGAGGGCCGCCTACGAGGTGACCAGGGCCACCGAGGGCAAG
TGGGAGGTGCTCATTGGCTCCTCACACATCCTCACCCCGACCCGCTTCCTGGATGACCTGAAGGCACTGG
ACAAGAAGCTGGAGGACATTGCCCTGCCCTGA

Translation (593 aa):
MAPSGLKAVVGEKILSGVIRSVKKDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPS
LEAIYLLSPTEKSVQALIKDFQGTPTFTYKAAHIFFTDTCPEPLFSELGRSRLAKVVKTLKEIHLAFLPY
EAQVFSLDAPHSTYNLYCPFRAEERTRQLEVLAQQIATLCATLQEYPAIRYRKGPEDTAQLAHAVLAKLN
AFKADTPSLGEGPEKTRSQLLIMDRAADPVSPLLHELTFQAMAYDLLDIEQDTYRYETTGLSEAREKAVL
LDEDDDLWVELRHMHIADVSKKVTELLRTFCESKRLTTDKANIKDLSQILKKMPQYQKELNKYSTHLHLA
DDCMKHFKGSVEKLCSVEQDLAMGSDAEGEKIKDSMKLIVPVLLDAAVPAYDKIRVLLLYILLRNGVSEE
NLAKLIQHANVQAHSSLIRNLEQLGGTVTNPGGSGTSSRLEPRERMEPTYQLSRWTPVIKDVMEDAVEDR
LDRNLWPFVSDPAPTASSQAAVSARFGHWHKNKAGIEARAGPRLIVYVMGGVAMSEMRAAYEVTRATEGK
WEVLIGSSHILTPTRFLDDLKALDKKLEDIALP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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