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Report for CCDS12202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12202.1 Public Homo sapiens 19 MARCHF2 24 110 108 CCDS HistoryNCBI Gene:51257Re-query CCDS DB by CCDS ID:12202.1Re-query CCDS DB by GeneID:51257See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12202.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215555.7 ENSP00000215555.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215555.7Link to Ensembl Protein Viewer:ENSP00000215555.2Re-query CCDS DB by Nucleotide ID:ENST00000215555Re-query CCDS DB by Protein ID:ENSP00000215555
Original member Current member EBI ENST00000602117.1 ENSP00000471536.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000602117.1Link to Ensembl Protein Viewer:ENSP00000471536.1Re-query CCDS DB by Nucleotide ID:ENST00000602117Re-query CCDS DB by Protein ID:ENSP00000471536
Original member Current member NCBI NM_001005415.2 NP_001005415.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005415.2Link to Protein Sequence:NP_001005415.1Re-query CCDS DB by Nucleotide ID:NM_001005415Re-query CCDS DB by Protein ID:NP_001005415Link to BLAST:NP_001005415.1
Original member Current member NCBI NM_001369776.1 NP_001356705.1 Accepted alive Link to Nucleotide Sequence:NM_001369776.1Link to Protein Sequence:NP_001356705.1Re-query CCDS DB by Nucleotide ID:NM_001369776Re-query CCDS DB by Protein ID:NP_001356705Link to BLAST:NP_001356705.1
Original member Current member NCBI NM_001369777.1 NP_001356706.1 Accepted alive Link to Nucleotide Sequence:NM_001369777.1Link to Protein Sequence:NP_001356706.1Re-query CCDS DB by Nucleotide ID:NM_001369777Re-query CCDS DB by Protein ID:NP_001356706Link to BLAST:NP_001356706.1
Original member Current member NCBI NM_001369778.1 NP_001356707.1 Accepted alive Link to Nucleotide Sequence:NM_001369778.1Link to Protein Sequence:NP_001356707.1Re-query CCDS DB by Nucleotide ID:NM_001369778Re-query CCDS DB by Protein ID:NP_001356707Link to BLAST:NP_001356707.1
Original member Current member NCBI NM_001369779.1 NP_001356708.1 Accepted alive Link to Nucleotide Sequence:NM_001369779.1Link to Protein Sequence:NP_001356708.1Re-query CCDS DB by Nucleotide ID:NM_001369779Re-query CCDS DB by Protein ID:NP_001356708Link to BLAST:NP_001356708.1
Original member Current member NCBI NM_016496.5 NP_057580.3 Accepted alive Link to Nucleotide Sequence:NM_016496.5Link to Protein Sequence:NP_057580.3Re-query CCDS DB by Nucleotide ID:NM_016496Re-query CCDS DB by Protein ID:NP_057580Link to BLAST:NP_057580.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005415.1 246 Q9P0N8-1 246 100% 0 0
NP_001356705.1 246 Q9P0N8-1 246 100% 0 0
NP_001356706.1 246 Q9P0N8-1 246 100% 0 0
NP_001356707.1 246 Q9P0N8-1 246 100% 0 0
NP_001356708.1 246 Q9P0N8-1 246 100% 0 0
NP_057580.3 246 Q9P0N8-1 246 100% 0 0

Chromosomal Locations for CCDS 12202.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8421841 8422016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8426609 8426804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8430658 8430867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8438388 8438546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGACGACGGGTGACTGCTGCCACCTCCCCGGCTCCCTGTGTGACTGCTCCGGCAGCCCTGCCTTCTCCA
AGGTCGTGGAGGCTACGGGCCTCGGACCGCCCCAGTATGTGGCACAGGTGACTTCAAGGGATGGCCGGCT
CCTCTCCACCGTCATCCGTGCCTTGGACACACCGAGTGATGGTCCTTTCTGCCGGATCTGCCATGAGGGA
GCGAACGGGGAGTGCTTGCTGTCCCCGTGTGGCTGCACCGGCACGCTGGGTGCCGTGCATAAGAGCTGTC
TGGAGAAGTGGCTTTCCTCATCTAACACCAGCTACTGCGAGCTGTGCCACACGGAGTTTGCAGTGGAGAA
ACGGCCTCGACCCCTCACAGAGTGGCTGAAGGACCCGGGGCCGCGGACGGAGAAGCGGACACTGTGCTGC
GACATGGTGTGTTTCCTGTTCATCACACCGCTGGCCGCCATCTCAGGCTGGTTGTGCCTGCGCGGGGCCC
AGGACCACCTCCGGCTCCACAGCCAGCTGGAGGCCGTGGGTCTCATTGCCCTCACCATCGCCCTCTTCAC
CATCTATGTCCTCTGGACGCTGGTCTCCTTCCGCTACCACTGCCAGCTGTACTCCGAGTGGAGAAAGACC
AACCAGAAAGTTCGCCTGAAGATCCGGGAGGCGGACAGCCCCGAGGGCCCCCAGCATTCTCCACTGGCAG
CTGGACTCCTGAAGAAGGTGGCAGAGGAGACACCAGTATGA

Translation (246 aa):
MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSDGPFCRICHEG
ANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLKDPGPRTEKRTLCC
DMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKT
NQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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