NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12215.1 Public Homo sapiens 19 ZNF426 24 110 108 CCDS HistoryNCBI Gene:79088Re-query CCDS DB by CCDS ID:12215.1Re-query CCDS DB by GeneID:79088See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12215.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253115.7 ENSP00000253115.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253115.7Link to Ensembl Protein Viewer:ENSP00000253115.1Re-query CCDS DB by Nucleotide ID:ENST00000253115Re-query CCDS DB by Protein ID:ENSP00000253115
Original member Current member EBI ENST00000535489.5 ENSP00000439017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535489.5Link to Ensembl Protein Viewer:ENSP00000439017.1Re-query CCDS DB by Nucleotide ID:ENST00000535489Re-query CCDS DB by Protein ID:ENSP00000439017
Original member Current member NCBI NM_024106.3 NP_077011.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024106.3Link to Protein Sequence:NP_077011.1Re-query CCDS DB by Nucleotide ID:NM_024106Re-query CCDS DB by Protein ID:NP_077011Link to BLAST:NP_077011.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077011.1 554 Q9BUY5 554 100% 0 0

Chromosomal Locations for CCDS 12215.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9528380 9529636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9530985 9531067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9532845 9532925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9533840 9533966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9535188 9535279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9536208 9536232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGCAGCTGCTGATTTGTCCCATGGACATTATCTTTCTGGGGACCCAGTTTGCCTTCATGAAGAAAAGA
CACCAGCAGGAAGAATAGTGGCTGACTGCCTAACAGATTGTTATCAGGATTCAGTGACCTTTGACGATGT
GGCTGTGGACTTCACCCAGGAGGAGTGGACTTTACTGGACTCAACTCAGAGAAGCCTCTACAGTGACGTG
ATGCTGGAGAACTACAAGAACCTGGCCACAGTAGGAGGTCAGATCATCAAACCCAGTCTAATCTCTTGGT
TGGAACAAGAAGAGTCAAGGACAGTTCAGGGAGGAGTTCTCCAAGGATGGGAAATGCGACTTGAAACCCA
GTGGTCTATACTTCAGCAGGACTTTTTGAGGGGTCAGACATCCATTGGGATACAATTGGAAGGAAAACAC
AATGGAAGGGAACTCTGTGACTGTGAGCAATGTGGAGAAGTCTTCAGTGAACACTCATGCCTTAAGACGC
ACGTGAGAACTCAAAGTACAGGGAACACTCATGACTGTAATCAGTATGGAAAAGATTTCCTTACCCTGTG
TGAGAAAACCTCTACTGGTGAGAAACTTTCTGAGTTTAATCAGAGTGAAAAAATCTTCAGCCTGACACCA
AATATTGTATACCAGAGAACTAGCACACAAGAAAAGTCATTTGAATGTAGTCACTGTGGAAAATCCTTCA
TTAATGAGTCATACCTTCAGGCACATATGAGAACTCACAATGGAGAAAAACTCTACGAATGGAGGAATTA
TGGGCCAGGTTTTATTGACTCTACAAGCCTTTCTGTGCTTATAGAAACCCTCAATGCAAAAAAGCCCTAC
AAATGTAAGGAATGTGGAAAAGGCTATAGATACCCAGCCTACCTCAGTATTCACATGCGAACCCACACTG
GGGAGAAACCATATGAATGTAAGGAATGTGGGAAAGCCTTCAATTATTCCAACTCATTTCAGATACATGG
AAGAACTCACACTGGAGAGAAACCCTATGTATGTAAGGAATGTGGGAAAGCCTTCACTCAGTACTCGGGC
CTTAGTATGCATGTACGATCTCACAGTGGAGACAAGCCCTATGAATGTAAGGAATGTGGGAAATCCTTCC
TTACATCCTCACGCCTTATTCAACATATAAGAACTCACACTGGAGAGAAGCCTTTTGTATGTGTTGAATG
TGGGAAAGCCTTTGCAGTTTCCTCAAATCTTAGTGGACATTTGAGAACTCACACTGAAGAGAAGGCCTGT
GAGTGTAAGATATGTGGGAAAGTATTTGGGTATCCCTCATGTCTTAATAATCACATGCGAACGCACAGTG
CCCAGAAACCATACACCTGTAAGGAATGTGGGAAGGCTTTTAACTATTCCACCCACCTTAAAATTCACAT
GCGAATCCACACTGGAGAAAAACCCTATGAGTGTAAACAATGTGGAAAGGCCTTCAGTCATTCCAGTTCA
TTTCAAATACATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGCAAGGAGTGTGGGAAAGCCTTCA
CGTGTTCCAGTTCCTTTAGAATTCATGAAAAAACTCACACAGAAGAGAAACCCTATAAATGTCAGCAATG
CGGGAAAGCTTACAGTCATCCCCGTTCACTTCGAAGACATGAACAAATTCACTAG

Translation (554 aa):
MAAADLSHGHYLSGDPVCLHEEKTPAGRIVADCLTDCYQDSVTFDDVAVDFTQEEWTLLDSTQRSLYSDV
MLENYKNLATVGGQIIKPSLISWLEQEESRTVQGGVLQGWEMRLETQWSILQQDFLRGQTSIGIQLEGKH
NGRELCDCEQCGEVFSEHSCLKTHVRTQSTGNTHDCNQYGKDFLTLCEKTSTGEKLSEFNQSEKIFSLTP
NIVYQRTSTQEKSFECSHCGKSFINESYLQAHMRTHNGEKLYEWRNYGPGFIDSTSLSVLIETLNAKKPY
KCKECGKGYRYPAYLSIHMRTHTGEKPYECKECGKAFNYSNSFQIHGRTHTGEKPYVCKECGKAFTQYSG
LSMHVRSHSGDKPYECKECGKSFLTSSRLIQHIRTHTGEKPFVCVECGKAFAVSSNLSGHLRTHTEEKAC
ECKICGKVFGYPSCLNNHMRTHSAQKPYTCKECGKAFNYSTHLKIHMRIHTGEKPYECKQCGKAFSHSSS
FQIHERTHTGEKPYECKECGKAFTCSSSFRIHEKTHTEEKPYKCQQCGKAYSHPRSLRRHEQIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH