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Report for CCDS12217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12217.1 Public Homo sapiens 19 ZNF562 24 110 108 CCDS HistoryNCBI Gene:54811Re-query CCDS DB by CCDS ID:12217.1Re-query CCDS DB by GeneID:54811See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12217.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293648.8 ENSP00000293648.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000293648.8Link to Ensembl Protein Viewer:ENSP00000293648.3Re-query CCDS DB by Nucleotide ID:ENST00000293648Re-query CCDS DB by Protein ID:ENSP00000293648
Original member Current member NCBI NM_017656.4 NP_060126.2 Accepted alive Link to Nucleotide Sequence:NM_017656.4Link to Protein Sequence:NP_060126.2Re-query CCDS DB by Nucleotide ID:NM_017656Re-query CCDS DB by Protein ID:NP_060126Link to BLAST:NP_060126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060126.2 354 Q6V9R5-2 354 100% 0 0

Chromosomal Locations for CCDS 12217.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9652949 9653881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9656547 9656653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9660720 9660744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGTCAGCCTTTGATATGTCCCATGATTTCTTTTTCTGCTTAACTTCAGAATGGGAAATACAACCTAGAA
CCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCACTGGGATACAAATGCAGACAAG
AAGCTACAGTGGATGGAAACTCTGTGAGAATTGTGGAGAGGTCTTCAGTGAACAGTTTTGCCTTAAGACA
CACATGAGAGCTCAGAATGGAGGGAACACTTTTGAGGGTAATTGTTATGGAAAAGACAGCATCAGTGTGC
ACAAGGAAGCCTCTATTGGACAAGAACTTTCCAAATTTAATCCATGTGGAAAAGTCTTCACCTTAACTCC
AGGCCTTGCTGTGCATCTTGAAATTCTCAATGGAAGACAACCCTACAAATGTAAGGAATGTGGAAAAGGC
TTTAAGTATTTTGCAAGCCTTGATAATCACATGGGAATCCACATTGGAGAGAAACTCTGTGAATTTCAGG
AATGTGAGAGAGCCATCACAACTTCCTCACACTTAAAGCAGTGTGTAGCAGTTCATACTGGAAAGAAATC
CGAAAAGACTAAGAACTGTGGGAAATCCTTCACTAATTTTTCTCAACTTTCTGCACATGCAAAAACTCAT
AAAGGAGAGAAGTCCTTTGAATGTAAAGAATGTGGAAGATCCTTTAGAAATTCCTCATCCTTTAATGTTC
ACATTCAAATTCACACTGGAATAAAACCACACAAATGTACGGAATGTGGGAAAGCCTTCACTAGATCAAC
TCACCTTACTCAACATGTAAGAACTCACACTGGAATAAAACCCTATGAATGTAAGGAATGTGGCCAAGCC
TTCACTCAGTACACGGGCCTTGCTATACACATACGAAATCACACTGGAGAGAAACCCTATCAGTGTAAGG
AATGTGGGAAAGCCTTCAATAGATCTTCAACGCTTACTCAACATAGAAGAATTCACACAGGAGAGAAGCC
TTATGAATGTGTTGAATGTGGGAAGACCTTCATTACTTCTTCCCATCGTAGTAAACATTTGAAAACTCAC
AGTGGAGAAAGGTAA

Translation (354 aa):
MSAFDMSHDFFFCLTSEWEIQPRTKRSSLQQGFLKNQIFTGIQMQTRSYSGWKLCENCGEVFSEQFCLKT
HMRAQNGGNTFEGNCYGKDSISVHKEASIGQELSKFNPCGKVFTLTPGLAVHLEILNGRQPYKCKECGKG
FKYFASLDNHMGIHIGEKLCEFQECERAITTSSHLKQCVAVHTGKKSEKTKNCGKSFTNFSQLSAHAKTH
KGEKSFECKECGRSFRNSSSFNVHIQIHTGIKPHKCTECGKAFTRSTHLTQHVRTHTGIKPYECKECGQA
FTQYTGLAIHIRNHTGEKPYQCKECGKAFNRSSTLTQHRRIHTGEKPYECVECGKTFITSSHRSKHLKTH
SGER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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