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Report for CCDS12223.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12223.3 Public Homo sapiens 19 RDH8 24 110 108 CCDS HistoryNCBI Gene:50700Re-query CCDS DB by CCDS ID:12223.3Re-query CCDS DB by GeneID:50700See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12223.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12223.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000591589.3 ENSP00000466058.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000591589.3Link to Ensembl Protein Viewer:ENSP00000466058.2Re-query CCDS DB by Nucleotide ID:ENST00000591589Re-query CCDS DB by Protein ID:ENSP00000466058
Original member Current member NCBI NM_015725.4 NP_056540.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015725.4Link to Protein Sequence:NP_056540.3Re-query CCDS DB by Nucleotide ID:NM_015725Re-query CCDS DB by Protein ID:NP_056540Link to BLAST:NP_056540.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056540.3 311 Q9NYR8 311 100% 0 0

Chromosomal Locations for CCDS 12223.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10013498 10013600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10017057 10017215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10018731 10018910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10020709 10020802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10021255 10021438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10021534 10021749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCCGCTGCACCCCGGACTGTGTTGATCTCCGGCTGCTCATCAGGAATTGGTCTGGAACTTGCAGTGC
AACTGGCCCATGACCCCAAGAAGCGCTACCAGGTCGTGGCCACCATGAGGGACCTGGGGAAGAAGGAGAC
ACTGGAGGCAGCTGCTGGGGAGGCTCTGGGGCAGACCCTCACCGTGGCCCAGCTGGACGTGTGCAGTGAT
GAGTCGGTGGCCCAGTGTCTCAGCTGTATCCAGGGAGAAGTGGACGTGCTGGTGAATAATGCTGGAATGG
GCCTGGTGGGGCCCCTGGAGGGGCTCAGCCTTGCTGCCATGCAGAATGTCTTTGACACCAACTTTTTCGG
AGCTGTCCGTCTCGTCAAAGCTGTGCTTCCAGGCATGAAGAGGAGGCGGCAGGGCCACATCGTGGTGATC
AGCAGTGTCATGGGCCTGCAGGGTGTCATCTTCAACGATGTCTATGCAGCTTCCAAGTTCGCCCTGGAGG
GATTCTTCGAAAGCCTCGCTATCCAGCTGCTGCAGTTCAACATCTTCATCTCCCTGGTGGAGCCAGGCCC
CGTGGTCACCGAGTTTGAGGGGAAGCTTCTGGCGCAGGTTTCTATGGCTGAGTTCCCAGGCACTGACCCT
GAGACCCTGCACTACTTCCGGGACCTCTATCTCCCAGCCTCCAGGAAGCTGTTTTGCTCCGTGGGACAGA
ACCCACAGGACGTGGTTCAGGCCATTGTCAACGTCATCAGCTCGACTCGACCACCCCTGCGCCGACAGAC
CAACATCCGCTACTCGCCGCTGACCACGCTCAAAACCGTGGATTCCTCTGGCAGCCTGTATGTGCGAACG
ACCCACCGCCTCCTCTTCCGCTGTCCACGCCTCCTCAACCTTGGCCTTCAATGTCTGTCCTGCGGCTGCC
TCCCAACGCGGGTGCGGCCAAGATGA

Translation (311 aa):
MAAAPRTVLISGCSSGIGLELAVQLAHDPKKRYQVVATMRDLGKKETLEAAAGEALGQTLTVAQLDVCSD
ESVAQCLSCIQGEVDVLVNNAGMGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKAVLPGMKRRRQGHIVVI
SSVMGLQGVIFNDVYAASKFALEGFFESLAIQLLQFNIFISLVEPGPVVTEFEGKLLAQVSMAEFPGTDP
ETLHYFRDLYLPASRKLFCSVGQNPQDVVQAIVNVISSTRPPLRRQTNIRYSPLTTLKTVDSSGSLYVRT
THRLLFRCPRLLNLGLQCLSCGCLPTRVRPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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