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Report for CCDS12259.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12259.2 Public Homo sapiens 19 SWSAP1 24 110 108 CCDS HistoryNCBI Gene:126074Re-query CCDS DB by CCDS ID:12259.2Re-query CCDS DB by GeneID:126074See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12259.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000674460.1 ENSP00000501355.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674460.1Link to Ensembl Protein Viewer:ENSP00000501355.1Re-query CCDS DB by Nucleotide ID:ENST00000674460Re-query CCDS DB by Protein ID:ENSP00000501355
Original member Current member NCBI NM_175871.4 NP_787067.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175871.4Link to Protein Sequence:NP_787067.3Re-query CCDS DB by Nucleotide ID:NM_175871Re-query CCDS DB by Protein ID:NP_787067Link to BLAST:NP_787067.3

Chromosomal Locations for CCDS 12259.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11374681 11374929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11375513 11376016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCGGAGACGCTGAGGCGGGTGCTAACCAGGGGCGGTGCGGCCTGGTCCGGGGAGGAGAACATGCCTG
CCGCCGGACCGCCTTTGCTGCTGCTCGGTACACCAGGATCTGGAAAAACAGCGCTGCTATTTGCTGCGGC
CCTAGAGGCGGCGGGGGAGGGCCAAGGCCCAGTCCTCTTCCTGACACGAAGGCCTCTTCAAAGCATGCCC
CGCGGGACCGGAACGACTCTAGACCCAATGCGACTCCAGAAGATCCGCTTCCAGTACCCACCCTCAACCC
GAGAGCTTTTCCGGCTCCTGTGCTCTGCCCATGAGGCCCCGGGGCCAGCCCCCTCCCTTCTGCTGCTCGA
CGGCCTAGAAGAGTACCTAGCGGAAGACCCAGAGCCCCAGGAAGCCGCCTACCTCATTGCCTTACTTCTA
GACACAGCTGCCCACTTCAGCCACCGGCTTGGGCCTGGCCGGGATTGTGGGCTCATGGTGGCCCTCCAGA
CCCAGGAGGAAGCAGGTAGTGGGGACGTCCTGCACCTGGCACTGCTCCAGCGGTATTTTCCTGCCCAGTG
CTGGCTGCAGCCAGATGCACCAGGTCCAGGAGAGCACGGCCTCCGAGCCTGCCTGGAGCCAGGCGGGCTG
GGCCCCAGAACAGAGTGGTGGGTGACTTTCCGATCAGATGGAGAAATGATGATCGCTCCGTGGCCCACCC
AGGCTGGTGACCCCAGCTCAGGCAAGGGTTCAAGCTCTGGAGGCCAGCCCTGA

Translation (250 aa):
MAETLRRVLTRGGAAWSGEENMPAAGPPLLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTRRPLQSMP
RGTGTTLDPMRLQKIRFQYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLL
DTAAHFSHRLGPGRDCGLMVALQTQEEAGSGDVLHLALLQRYFPAQCWLQPDAPGPGEHGLRACLEPGGL
GPRTEWWVTFRSDGEMMIAPWPTQAGDPSSGKGSSSGGQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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