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Report for CCDS12275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12275.1 Public Homo sapiens 19 WDR83 24 110 108 CCDS HistoryNCBI Gene:84292Re-query CCDS DB by CCDS ID:12275.1Re-query CCDS DB by GeneID:84292See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12275.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418543.8 ENSP00000402653.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000418543.8Link to Ensembl Protein Viewer:ENSP00000402653.3Re-query CCDS DB by Nucleotide ID:ENST00000418543Re-query CCDS DB by Protein ID:ENSP00000402653
Original member Current member NCBI NM_001099737.3 NP_001093207.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099737.3Link to Protein Sequence:NP_001093207.1Re-query CCDS DB by Nucleotide ID:NM_001099737Re-query CCDS DB by Protein ID:NP_001093207Link to BLAST:NP_001093207.1
Original member Current member NCBI NM_032332.4 NP_115708.1 Accepted alive Link to Nucleotide Sequence:NM_032332.4Link to Protein Sequence:NP_115708.1Re-query CCDS DB by Nucleotide ID:NM_032332Re-query CCDS DB by Protein ID:NP_115708Link to BLAST:NP_115708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093207.1 315 Q9BRX9 315 100% 0 0
NP_115708.1 315 Q9BRX9 315 100% 0 0

Chromosomal Locations for CCDS 12275.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12669791 12669893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12669977 12670097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12670180 12670285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12670563 12670611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12670695 12670821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12672847 12672914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12673008 12673116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12673202 12673316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12675523 12675672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCTTTCCCTGAGCCAAAGCCGCGGCCTCCAGAGCTGCCGCAGAAACGGTTGAAGACGCTGGACTGCG
GGCAGGGGGCAGTGCGAGCCGTACGATTTAATGTGGATGGCAATTACTGCCTGACGTGCGGCAGTGACAA
GACGCTGAAGCTGTGGAACCCGCTTCGGGGGACGCTGCTGCGGACGTACAGCGGCCACGGCTACGAGGTG
CTGGATGCGGCCGGCTCCTTTGACAACAGTAGTCTCTGCTCCGGCGGCGGGGACAAGGCGGTGGTTCTGT
GGGATGTGGCATCAGGGCAGGTCGTGCGCAAATTCCGGGGCCACGCAGGGAAGGTGAACACGGTGCAGTT
TAATGAAGAGGCCACAGTTATCCTGTCCGGCTCTATTGATTCCAGTATCCGCTGTTGGGATTGCCGCTCA
CGGAGGCCTGAGCCAGTGCAGACGCTGGATGAGGCCAGAGATGGCGTGTCCAGTGTGAAGGTGTCAGACC
ACGAGATCCTGGCAGGCTCCGTGGATGGCCGCGTGAGACGCTATGACCTAAGGATGGGGCAGCTCTTCTC
AGACTACGTGGGCAGCCCCATCACCTGCACCTGCTTCAGCCGGGATGGGCAGTGCACCCTGGTGTCCAGC
CTGGACTCCACATTGCGGCTCCTGGACAAAGACACAGGGGAGCTGCTGGGCGAGTACAAGGGCCATAAGA
ACCAGGAATACAAGCTGGACTGCTGCCTGAGCGAGCGTGACACACATGTGGTCAGCTGTTCTGAGGACGG
GAAGGTGTTCTTCTGGGACCTGGTGGAGGGTGCGCTGGCTCTGGCCCTGCCTGTGGGTTCCGGTGTGGTG
CAGTCGCTGGCCTACCACCCAACAGAGCCCTGCCTGCTGACCGCCATGGGAGGCAGCGTCCAGTGCTGGC
GAGAGGAGGCCTATGAGGCAGAGGATGGAGCAGGCTGA

Translation (315 aa):
MAFPEPKPRPPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEV
LDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWDCRS
RRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSS
LDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSGVV
QSLAYHPTEPCLLTAMGGSVQCWREEAYEAEDGAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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