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Report for CCDS12393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12393.1 Public Homo sapiens 19 TMEM161A 24 110 108 CCDS HistoryNCBI Gene:54929Re-query CCDS DB by CCDS ID:12393.1Re-query CCDS DB by GeneID:54929See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000162044.14 ENSP00000162044.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000162044.14Link to Ensembl Protein Viewer:ENSP00000162044.7Re-query CCDS DB by Nucleotide ID:ENST00000162044Re-query CCDS DB by Protein ID:ENSP00000162044
Original member Current member NCBI NM_017814.3 NP_060284.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017814.3Link to Protein Sequence:NP_060284.1Re-query CCDS DB by Nucleotide ID:NM_017814Re-query CCDS DB by Protein ID:NP_060284Link to BLAST:NP_060284.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060284.1 479 Q9NX61-1 479 100% 0 0

Chromosomal Locations for CCDS 12393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19119930 19120183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19120765 19120861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19120992 19121166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19121308 19121421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19121525 19121668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19121759 19121819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19130156 19130307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19132352 19132508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19132657 19132754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19133130 19133210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19134784 19134887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19138426 19138428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGCGGTCCTCGGAGTACAGCTGGTGGTGACCCTGCTCACTGCCACCCTCATGCACAGGCTGGCGCCAC
ACTGCTCCTTCGCGCGCTGGCTGCTCTGTAACGGCAGTTTGTTCCGATACAAGCACCCGTCTGAGGAGGA
GCTTCGGGCCCTGGCGGGGAAGCCGAGGCCCAGAGGCAGGAAAGAGCGGTGGGCCAATGGCCTTAGTGAG
GAGAAGCCACTGTCTGTGCCCCGAGATGCCCCGTTCCAGCTGGAGACCTGCCCCCTCACGACCGTGGATG
CCCTGGTCCTGCGCTTCTTCCTGGAGTACCAGTGGTTTGTGGACTTTGCTGTGTACTCGGGCGGCGTGTA
CCTCTTCACAGAGGCCTACTACTACATGCTGGGACCAGCCAAGGAGACTAACATTGCTGTGTTCTGGTGC
CTGCTCACGGTGACCTTCTCCATCAAGATGTTCCTGACAGTGACACGGCTGTACTTCAGCGCCGAGGAGG
GGGGTGAGCGCTCTGTCTGCCTCACCTTTGCCTTCCTCTTCCTGCTGCTGGCCATGCTGGTGCAAGTGGT
GCGGGAGGAGACCCTCGAGCTGGGCCTGGAGCCTGGTCTGGCCAGCATGACCCAGAACTTAGAGCCACTT
CTGAAGAAGCAGGGCTGGGACTGGGCGCTTCCTGTGGCCAAGCTGGCTATCCGCGTGGGACTGGCAGTGG
TGGGCTCTGTGCTGGGTGCCTTCCTCACCTTCCCAGGCCTGCGGCTGGCCCAGACCCACCGGGACGCACT
GACCATGTCGGAGGACAGACCCATGCTGCAGTTCCTCCTGCACACCAGCTTCCTGTCTCCCCTGTTCATC
CTGTGGCTCTGGACAAAGCCCATTGCACGGGACTTCCTGCACCAGCCGCCGTTTGGGGAGACGCGTTTCT
CCCTGCTGTCCGATTCTGCCTTCGACTCTGGGCGCCTCTGGTTGCTGGTGGTGCTGTGCCTGCTGCGGCT
GGCGGTGACCCGGCCCCACCTGCAGGCCTACCTGTGCCTGGCCAAGGCCCGGGTGGAGCAGCTGCGAAGG
GAGGCTGGCCGCATCGAAGCCCGTGAAATCCAGCAGAGGGTGGTCCGAGTCTACTGCTATGTGACCGTGG
TGAGCTTGCAGTACCTGACGCCGCTCATCCTCACCCTCAACTGCACACTTCTGCTCAAGACGCTGGGAGG
CTATTCCTGGGGCCTGGGCCCAGCTCCTCTACTATCCCCCGACCCATCCTCAGCCAGCGCTGCCCCCATC
GGCTCTGGGGAGGACGAAGTCCAGCAGACTGCAGCGCGGATTGCCGGGGCTCTGGGTGGCCTGCTTACTC
CCCTCTTCCTCCGTGGCGTCCTGGCCTACCTCATCTGGTGGACGGCTGCCTGCCAGCTGCTCGCCAGCCT
TTTCGGCCTCTACTTCCACCAGCACTTGGCAGGCTCCTAG

Translation (479 aa):
MAVLGVQLVVTLLTATLMHRLAPHCSFARWLLCNGSLFRYKHPSEEELRALAGKPRPRGRKERWANGLSE
EKPLSVPRDAPFQLETCPLTTVDALVLRFFLEYQWFVDFAVYSGGVYLFTEAYYYMLGPAKETNIAVFWC
LLTVTFSIKMFLTVTRLYFSAEEGGERSVCLTFAFLFLLLAMLVQVVREETLELGLEPGLASMTQNLEPL
LKKQGWDWALPVAKLAIRVGLAVVGSVLGAFLTFPGLRLAQTHRDALTMSEDRPMLQFLLHTSFLSPLFI
LWLWTKPIARDFLHQPPFGETRFSLLSDSAFDSGRLWLLVVLCLLRLAVTRPHLQAYLCLAKARVEQLRR
EAGRIEAREIQQRVVRVYCYVTVVSLQYLTPLILTLNCTLLLKTLGGYSWGLGPAPLLSPDPSSASAAPI
GSGEDEVQQTAARIAGALGGLLTPLFLRGVLAYLIWWTAACQLLASLFGLYFHQHLAGS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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