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Report for CCDS1242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1242.1 Public Homo sapiens 1 HSD17B7 24 110 108 CCDS HistoryNCBI Gene:51478Re-query CCDS DB by CCDS ID:1242.1Re-query CCDS DB by GeneID:51478See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1242.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254521.8 ENSP00000254521.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254521.8Link to Ensembl Protein Viewer:ENSP00000254521.3Re-query CCDS DB by Nucleotide ID:ENST00000254521Re-query CCDS DB by Protein ID:ENSP00000254521
Original member Current member NCBI NM_016371.4 NP_057455.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016371.4Link to Protein Sequence:NP_057455.1Re-query CCDS DB by Nucleotide ID:NM_016371Re-query CCDS DB by Protein ID:NP_057455Link to BLAST:NP_057455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057455.1 341 P56937-1 341 100% 0 0

Chromosomal Locations for CCDS 1242.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162790801 162790835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162792659 162792862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162796585 162796677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162797802 162797916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162799743 162799937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162803431 162803535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162804267 162804323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162805394 162805492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162812298 162812420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGCGAAAGGTGGTTTTGATCACCGGGGCTAGCAGTGGCATTGGCCTGGCCCTCTGCAAGCGGCTGCTGG
CGGAAGATGATGAGCTTCATCTGTGTTTGGCGTGCAGGAACATGAGCAAGGCAGAAGCTGTCTGTGCTGC
TCTGCTGGCCTCTCACCCCACTGCTGAGGTCACCATTGTCCAGGTGGATGTCAGCAACCTGCAGTCGGTC
TTCCGGGCCTCCAAGGAACTTAAGCAAAGGTTTCAGAGATTAGACTGTATATATCTAAATGCTGGGATCA
TGCCTAATCCACAACTAAATATCAAAGCACTTTTCTTTGGCCTCTTTTCAAGAAAAGTGATTCATATGTT
CTCCACAGCTGAAGGCCTGCTGACCCAGGGTGATAAGATCACTGCTGATGGACTTCAGGAGGTGTTTGAG
ACCAATGTCTTTGGCCATTTTATCCTGATTCGGGAACTGGAGCCTCTCCTCTGTCACAGTGACAATCCAT
CTCAGCTCATCTGGACATCATCTCGCAGTGCAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAG
CAAAGGCAAGGAACCCTACAGCTCTTCCAAATATGCCACTGACCTTTTGAGTGTGGCTTTGAACAGGAAC
TTCAACCAGCAGGGTCTCTATTCCAATGTGGCCTGTCCAGGTACAGCATTGACCAATTTGACATATGGAA
TTCTGCCTCCGTTTATATGGACGCTGTTGATGCCGGCAATATTGCTACTTCGCTTTTTTGCAAATGCATT
CACTTTGACACCATATAATGGAACAGAAGCTCTGGTATGGCTTTTCCACCAAAAGCCTGAATCTCTCAAT
CCTCTGATCAAATATCTGAGTGCCACCACTGGCTTTGGAAGAAATTACATTATGACCCAGAAGATGGACC
TAGATGAAGACACTGCTGAAAAATTTTATCAAAAGTTACTGGAACTGGAAAAGCACATTAGGGTCACTAT
TCAAAAAACAGATAATCAGGCCAGGCTCAGTGGCTCATGCCTATAA

Translation (341 aa):
MRKVVLITGASSGIGLALCKRLLAEDDELHLCLACRNMSKAEAVCAALLASHPTAEVTIVQVDVSNLQSV
FRASKELKQRFQRLDCIYLNAGIMPNPQLNIKALFFGLFSRKVIHMFSTAEGLLTQGDKITADGLQEVFE
TNVFGHFILIRELEPLLCHSDNPSQLIWTSSRSARKSNFSLEDFQHSKGKEPYSSSKYATDLLSVALNRN
FNQQGLYSNVACPGTALTNLTYGILPPFIWTLLMPAILLLRFFANAFTLTPYNGTEALVWLFHQKPESLN
PLIKYLSATTGFGRNYIMTQKMDLDEDTAEKFYQKLLELEKHIRVTIQKTDNQARLSGSCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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