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Report for CCDS12440.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12440.2 Public Homo sapiens 19 ZNF792 24 110 108 CCDS HistoryNCBI Gene:126375Re-query CCDS DB by CCDS ID:12440.2Re-query CCDS DB by GeneID:126375See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12440.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404801.2 ENSP00000385099.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404801.2Link to Ensembl Protein Viewer:ENSP00000385099.1Re-query CCDS DB by Nucleotide ID:ENST00000404801Re-query CCDS DB by Protein ID:ENSP00000385099
Original member Current member NCBI NM_175872.5 NP_787068.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175872.5Link to Protein Sequence:NP_787068.3Re-query CCDS DB by Nucleotide ID:NM_175872Re-query CCDS DB by Protein ID:NP_787068Link to BLAST:NP_787068.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787068.3 632 Q3KQV3 632 100% 0 0

Chromosomal Locations for CCDS 12440.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34957956 34959571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34960235 34960357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34960868 34960994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34963630 34963662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGGCAGCGGCGGCGCTGCGGGACCCCGCGCAGGGCTGCGTGACCTTTGAGGACGTGACCATTTACTTCT
CCCAGGAGGAGTGGGTGCTCCTCGATGAGGCTCAGAGACTCCTGTACTGCGATGTGATGCTGGAAAACTT
TGCACTTATAGCCTCGCTGGGACTTATATCTTTCAGGTCCCACATCGTTTCCCAGTTGGAGATGGGGAAA
GAGCCCTGGGTGCCTGACAGTGTGGATATGACATCAGCCATGGCCAGAGGGGCTTATGGCAGGCCTGGCT
CTGATTTTTGCCATGGAACAGAGGGCAAGGACTTACCTTCTGAGCATAACGTTTCTGTAGAAGGAGTGGC
ACAGGACAGGAGTCCCGAGGCAACTCTGTGCCCCCAGAAGACCTGCCCCTGTGACATATGTGGCCTACGT
TTGAAAGACATTTTGCATTTGGCTGAACACCAGACAACACATCCCAGGCAGAAACCATTTGTGTGTGAGG
CATATGTGAAAGGCTCTGAGTTCAGTGCAAACCTTCCCCGGAAACAGGTGCAGCAGAACGTACACAACCC
TATCAGAACGGAGGAGGGCCAGGCTTCCCCTGTAAAGACCTGCAGAGACCACACATCAGATCAGCTTTCC
ACCTGCAGGGAGGGTGGGAAGGACTTTGTGGCCACAGCAGGGTTTCTGCAGTGTGAGGTCACTCCCAGCG
ATGGGGAGCCGCACGAGGCCACCGAAGGTGTGGTGGATTTTCACATTGCACTAAGGCATAACAAGTGCTG
TGAATCTGGGGATGCCTTCAATAACAAATCCACTCTTGTTCAGCACCAGAGAATCCACAGCAGAGAAAGG
CCTTATGAATGCAGCAAATGTGGAATCTTCTTCACTTACGCCGCTGACCTCACTCAACACCAGAAAGTTC
ACAATAGAGGAAAACCGTATGAGTGCTGTGAATGTGGAAAATTCTTCAGCCAGCACTCCAGCCTTGTTAA
ACATCGCAGGGTTCACACCGGTGAAAGCCCTCACGTGTGTGGTGACTGTGGGAAATTCTTCAGCCGAAGC
TCCAACCTCATTCAGCATAAGAGGGTTCACACTGGTGAAAAGCCATATGAGTGCAGCGACTGTGGGAAGT
TCTTCAGCCAGCGTTCCAACCTCATTCATCATAAGAGGGTTCATACGGGCAGAAGTGCCCATGAGTGCAG
TGAATGTGGGAAATCTTTCAACTGCAACTCCAGCCTAATTAAACATTGGAGAGTTCACACTGGAGAAAGA
CCTTACAAGTGTAACGAATGTGGGAAATTCTTCAGCCACATTGCCAGCCTCATTCAACATCAGATAGTTC
ACACTGGCGAGCGGCCTCACGGGTGTGGTGAGTGTGGGAAAGCCTTCAGCCGAAGCTCTGACCTCATGAA
ACATCAGCGAGTTCACACTGGTGAGCGGCCTTATGAATGCAATGAATGTGGGAAGTTATTTAGCCAGAGC
TCCAGCCTCAATAGCCATCGGAGACTTCACACTGGTGAACGGCCTTACCAGTGCAGTGAATGTGGGAAAT
TCTTTAACCAAAGCTCCAGCCTCAATAACCACCGGAGACTTCACACCGGCGAGCGGCCTTATGAGTGCAG
CGAATGTGGGAAAACCTTCAGGCAGAGGTCCAATCTGAGGCAGCACCTGAAAGTTCACAAACCAGACAGG
CCTTACGAATGCAGCGAATGTGGGAAAGCCTTCAACCAAAGGCCTACCCTCATTCGGCATCAGAAGATTC
ACATCAGAGAAAGGAGCATGGAGAATGTGCTCCTTCCCTGTTCACAGCACACACCAGAGATAAGCTCTGA
GAACAGACCTTATCAGGGCGCTGTCAACTACAAGTTGAAACTTGTTCATCCAAGTACCCACCCTGGGGAG
GTTCCCTAG

Translation (632 aa):
MAAAALRDPAQGCVTFEDVTIYFSQEEWVLLDEAQRLLYCDVMLENFALIASLGLISFRSHIVSQLEMGK
EPWVPDSVDMTSAMARGAYGRPGSDFCHGTEGKDLPSEHNVSVEGVAQDRSPEATLCPQKTCPCDICGLR
LKDILHLAEHQTTHPRQKPFVCEAYVKGSEFSANLPRKQVQQNVHNPIRTEEGQASPVKTCRDHTSDQLS
TCREGGKDFVATAGFLQCEVTPSDGEPHEATEGVVDFHIALRHNKCCESGDAFNNKSTLVQHQRIHSRER
PYECSKCGIFFTYAADLTQHQKVHNRGKPYECCECGKFFSQHSSLVKHRRVHTGESPHVCGDCGKFFSRS
SNLIQHKRVHTGEKPYECSDCGKFFSQRSNLIHHKRVHTGRSAHECSECGKSFNCNSSLIKHWRVHTGER
PYKCNECGKFFSHIASLIQHQIVHTGERPHGCGECGKAFSRSSDLMKHQRVHTGERPYECNECGKLFSQS
SSLNSHRRLHTGERPYQCSECGKFFNQSSSLNNHRRLHTGERPYECSECGKTFRQRSNLRQHLKVHKPDR
PYECSECGKAFNQRPTLIRHQKIHIRERSMENVLLPCSQHTPEISSENRPYQGAVNYKLKLVHPSTHPGE
VP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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